/* * #%L * gitools-core * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.matrix.model.iterable; import org.gitools.api.matrix.IAnnotations; import org.gitools.api.matrix.IMatrixDimension; import org.gitools.api.matrix.IMatrixPosition; import org.gitools.api.matrix.IMatrixPredicate; import org.gitools.utils.textpattern.TextPattern; import java.util.Set; public class IdentifiersPredicate<T> implements IMatrixPredicate<T>, TextPattern.VariableValueResolver { private IAnnotations annotations; private IMatrixDimension iterationDimension; private TextPattern pattern; private Set<String> values; private transient String currentIdentifier; public IdentifiersPredicate(IMatrixDimension iterationDimension, Set<String> values) { this(iterationDimension, values, null, null); } public IdentifiersPredicate(IMatrixDimension iterationDimension, Set<String> values, String pattern, IAnnotations annotations) { this.iterationDimension = iterationDimension; this.pattern = (pattern == null ? null : new TextPattern(pattern)); this.annotations = annotations; this.values = values; } @Override public boolean apply(T object, IMatrixPosition position) { currentIdentifier = position.get(iterationDimension); String value = (pattern != null ? pattern.generate(this) : currentIdentifier); return values.contains(value); } @Override public String resolveValue(String variableName) { if (variableName.equalsIgnoreCase("id")) { return currentIdentifier; } String annotation = null; if (annotations != null) { annotation = annotations.getAnnotation(currentIdentifier, variableName); } if (annotation == null) { return ""; } return annotation; } }