/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.analysis.clustering.annotations;
import org.gitools.api.matrix.IAnnotations;
import org.gitools.utils.textpattern.TextPattern.VariableValueResolver;
public class AnnotationResolver implements VariableValueResolver {
private final IAnnotations am;
private String label;
private final String na;
public AnnotationResolver(IAnnotations am, String label, String na) {
this.am = am;
if (label != null) {
setLabel(label);
}
this.na = na;
}
final void setLabel(String label) {
this.label = label;
}
@Override
public String resolveValue(String variableName) {
if (variableName.equalsIgnoreCase("id")) {
return label;
}
if (label == null) {
return na;
}
String annotation = null;
if (am != null) {
annotation = am.getAnnotation(label, variableName);
}
if (annotation == null) {
return na;
}
return annotation;
}
}