/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.data;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.api.matrix.MatrixDimensionKey;
import org.gitools.heatmap.Heatmap;
import org.gitools.heatmap.MatrixViewSorter;
import org.gitools.ui.app.actions.HeatmapDimensionAction;
import org.gitools.ui.app.sort.AnnotationSortPage;
import org.gitools.ui.core.Application;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import org.gitools.ui.platform.wizard.PageDialog;
import java.awt.event.ActionEvent;
public class SortByAnnotationAction extends HeatmapDimensionAction {
public SortByAnnotationAction(MatrixDimensionKey dim) {
super(dim, "<html><i>Sort</i> by annotations</html>");
}
protected AnnotationSortPage createSortPage(Heatmap hm) {
return new AnnotationSortPage(hm, getDimensionKey());
}
@Override
public void actionPerformed(ActionEvent e) {
final Heatmap hm = getHeatmap();
final AnnotationSortPage page = createSortPage(hm);
PageDialog dlg = new PageDialog(Application.get(), page);
dlg.open();
if (dlg.isCancelled()) {
return;
}
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) {
monitor.begin("Sorting ...", 1);
MatrixViewSorter.sortByLabel(hm, page.isApplyToRowsSelected(), page.getRowsPattern(), page.getRowsDirection(), page.getRowsNumeric(), page.isApplyToColumnsSelected(), page.getColumnsPattern(), page.getColumnsDirection(), page.getColumnsNumeric());
}
});
Application.get().showNotification("Annotation sorting applied");
}
}