/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.data.analysis;
import com.google.common.base.Strings;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.heatmap.header.HeatmapHeader;
import org.gitools.heatmap.header.HierarchicalCluster;
import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader;
import org.gitools.ui.app.analysis.clustering.visualization.DendrogramEditor;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.HeatmapPosition;
import org.gitools.ui.core.actions.HeatmapAction;
import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction;
import org.gitools.ui.platform.icons.IconNames;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import java.awt.event.ActionEvent;
public class ViewDendrogramAction extends HeatmapAction implements IHeatmapHeaderAction {
private HierarchicalClusterHeatmapHeader header;
private String clusterName = "";
public ViewDendrogramAction() {
super("<html><i>ViewDendrogramAction</i></html>");
setSmallIconFromResource(IconNames.view16);
}
@Override
public void actionPerformed(ActionEvent e) {
if (header == null) {
return;
}
final HierarchicalCluster cluster = header.getHierarchicalCluster(clusterName);
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) throws Exception {
Application.get().getEditorsPanel().addEditor(new DendrogramEditor(cluster));
}
});
}
@Override
public void onConfigure(HeatmapHeader header, HeatmapPosition position) {
setEnabled(header instanceof HierarchicalClusterHeatmapHeader
&& ((HierarchicalClusterHeatmapHeader) header).getHierarchicalCluster() != null);
if (header instanceof HierarchicalClusterHeatmapHeader) {
this.header = (HierarchicalClusterHeatmapHeader) header;
if (!Strings.isNullOrEmpty(position.getHeaderAnnotation())) {
this.clusterName = position.getHeaderAnnotation();
this.setName("<html><i>View</i> <b>" + clusterName + "</b> dendrogram</html>");
} else {
this.clusterName = "";
this.setName("<html><i>View</i> <b>entire</b> hierarchical dendrogram</html>");
}
}
}
}