/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.actions.data.analysis; import com.google.common.base.Strings; import org.gitools.api.analysis.IProgressMonitor; import org.gitools.heatmap.header.HeatmapHeader; import org.gitools.heatmap.header.HierarchicalCluster; import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader; import org.gitools.ui.app.analysis.clustering.visualization.DendrogramEditor; import org.gitools.ui.core.Application; import org.gitools.ui.core.HeatmapPosition; import org.gitools.ui.core.actions.HeatmapAction; import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction; import org.gitools.ui.platform.icons.IconNames; import org.gitools.ui.platform.progress.JobRunnable; import org.gitools.ui.platform.progress.JobThread; import java.awt.event.ActionEvent; public class ViewDendrogramAction extends HeatmapAction implements IHeatmapHeaderAction { private HierarchicalClusterHeatmapHeader header; private String clusterName = ""; public ViewDendrogramAction() { super("<html><i>ViewDendrogramAction</i></html>"); setSmallIconFromResource(IconNames.view16); } @Override public void actionPerformed(ActionEvent e) { if (header == null) { return; } final HierarchicalCluster cluster = header.getHierarchicalCluster(clusterName); JobThread.execute(Application.get(), new JobRunnable() { @Override public void run(IProgressMonitor monitor) throws Exception { Application.get().getEditorsPanel().addEditor(new DendrogramEditor(cluster)); } }); } @Override public void onConfigure(HeatmapHeader header, HeatmapPosition position) { setEnabled(header instanceof HierarchicalClusterHeatmapHeader && ((HierarchicalClusterHeatmapHeader) header).getHierarchicalCluster() != null); if (header instanceof HierarchicalClusterHeatmapHeader) { this.header = (HierarchicalClusterHeatmapHeader) header; if (!Strings.isNullOrEmpty(position.getHeaderAnnotation())) { this.clusterName = position.getHeaderAnnotation(); this.setName("<html><i>View</i> <b>" + clusterName + "</b> dendrogram</html>"); } else { this.clusterName = ""; this.setName("<html><i>View</i> <b>entire</b> hierarchical dendrogram</html>"); } } } }