/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.wizard;
import org.gitools.api.persistence.FileFormat;
import org.gitools.datasources.modules.importer.ModulesImporter;
import org.gitools.matrix.FileFormats;
import org.gitools.ui.core.pages.common.BasicSaveFilePage;
import org.gitools.ui.core.pages.common.SaveFilePage;
import org.gitools.ui.platform.IconUtils;
import org.gitools.ui.platform.icons.IconNames;
import org.gitools.ui.platform.settings.Settings;
import org.gitools.ui.platform.wizard.AbstractWizard;
import org.gitools.ui.platform.wizard.IWizardPage;
public class ModulesImportWizard extends AbstractWizard {
private final FileFormat[] supportedFormats = new FileFormat[]{FileFormats.MODULES_2C_MAP, FileFormats.GENE_MATRIX, FileFormats.GENE_MATRIX_TRANSPOSED,};
private final ModulesImporter importer;
private ModulesSourcePage moduleCategoryPage;
private ModulesOrganismPage organismPage;
private ModulesFeaturesPage featuresPage;
private BasicSaveFilePage saveFilePage;
protected ModulesImportWizard(ModulesImporter importer) {
this.importer = importer;
setTitle("Import modules...");
setLogo(IconUtils.getImageIconResourceScaledByHeight(IconNames.LOGO_MODULES, 96));
}
@Override
public void addPages() {
moduleCategoryPage = new ModulesSourcePage(importer);
addPage(moduleCategoryPage);
organismPage = new ModulesOrganismPage(importer);
addPage(organismPage);
featuresPage = new ModulesFeaturesPage(importer);
addPage(featuresPage);
// Destination
saveFilePage = new BasicSaveFilePage() {
@Override
public void updateModel() {
Settings.get().setLastMapPath(getFolder());
}
};
saveFilePage.setTitle("Select destination file");
saveFilePage.setFolder(Settings.get().getLastMapPath());
saveFilePage.setFormats(supportedFormats);
addPage(saveFilePage);
}
@Override
public void pageEntered(IWizardPage page) {
if (saveFilePage.equals(page)) {
if (saveFilePage.getFileNameWithoutExtension().isEmpty()) {
saveFilePage.setFileNameWithoutExtension(automaticFileName(importer));
}
}
}
private String automaticFileName(ModulesImporter importer) {
StringBuilder sb = new StringBuilder();
sb.append(importer.getOrganism().getName().replace(' ', '_'));
sb.append("__");
sb.append(importer.getModuleCategory().getRef().replace(':', '_'));
sb.append("__");
sb.append(importer.getFeatureCategory().getRef().replace(':', '_'));
return sb.toString();
}
public SaveFilePage getSaveFilePage() {
return saveFilePage;
}
}