/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.wizard; import org.gitools.api.persistence.FileFormat; import org.gitools.datasources.modules.importer.ModulesImporter; import org.gitools.matrix.FileFormats; import org.gitools.ui.core.pages.common.BasicSaveFilePage; import org.gitools.ui.core.pages.common.SaveFilePage; import org.gitools.ui.platform.IconUtils; import org.gitools.ui.platform.icons.IconNames; import org.gitools.ui.platform.settings.Settings; import org.gitools.ui.platform.wizard.AbstractWizard; import org.gitools.ui.platform.wizard.IWizardPage; public class ModulesImportWizard extends AbstractWizard { private final FileFormat[] supportedFormats = new FileFormat[]{FileFormats.MODULES_2C_MAP, FileFormats.GENE_MATRIX, FileFormats.GENE_MATRIX_TRANSPOSED,}; private final ModulesImporter importer; private ModulesSourcePage moduleCategoryPage; private ModulesOrganismPage organismPage; private ModulesFeaturesPage featuresPage; private BasicSaveFilePage saveFilePage; protected ModulesImportWizard(ModulesImporter importer) { this.importer = importer; setTitle("Import modules..."); setLogo(IconUtils.getImageIconResourceScaledByHeight(IconNames.LOGO_MODULES, 96)); } @Override public void addPages() { moduleCategoryPage = new ModulesSourcePage(importer); addPage(moduleCategoryPage); organismPage = new ModulesOrganismPage(importer); addPage(organismPage); featuresPage = new ModulesFeaturesPage(importer); addPage(featuresPage); // Destination saveFilePage = new BasicSaveFilePage() { @Override public void updateModel() { Settings.get().setLastMapPath(getFolder()); } }; saveFilePage.setTitle("Select destination file"); saveFilePage.setFolder(Settings.get().getLastMapPath()); saveFilePage.setFormats(supportedFormats); addPage(saveFilePage); } @Override public void pageEntered(IWizardPage page) { if (saveFilePage.equals(page)) { if (saveFilePage.getFileNameWithoutExtension().isEmpty()) { saveFilePage.setFileNameWithoutExtension(automaticFileName(importer)); } } } private String automaticFileName(ModulesImporter importer) { StringBuilder sb = new StringBuilder(); sb.append(importer.getOrganism().getName().replace(' ', '_')); sb.append("__"); sb.append(importer.getModuleCategory().getRef().replace(':', '_')); sb.append("__"); sb.append(importer.getFeatureCategory().getRef().replace(':', '_')); return sb.toString(); } public SaveFilePage getSaveFilePage() { return saveFilePage; } }