/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.analysis.clustering; import org.gitools.analysis.clustering.ClusteringData; import org.gitools.analysis.clustering.ClusteringMethod; import org.gitools.analysis.clustering.MatrixClusteringData; import org.gitools.analysis.clustering.hierarchical.HierarchicalMethod; import org.gitools.analysis.clustering.kmeans.KMeansPlusPlusMethod; import org.gitools.api.matrix.MatrixDimensionKey; import org.gitools.heatmap.Heatmap; import org.gitools.ui.platform.IconUtils; import org.gitools.ui.platform.icons.IconNames; import org.gitools.ui.platform.wizard.AbstractWizard; import org.gitools.ui.platform.wizard.IWizardPage; import java.util.Arrays; import java.util.List; public class ClusteringWizard extends AbstractWizard { private final Heatmap heatmap; private final List<? extends ClusteringMethod> methods; private MethodSelectionPage methodPage; private HCLParamsPage hclPage; private KMeansPlusPlusPage kmeansPage; private static HierarchicalMethod HCL_METHOD = new HierarchicalMethod(); private static KMeansPlusPlusMethod KMEANS_METHOD = new KMeansPlusPlusMethod(); public ClusteringWizard(Heatmap heatmap) { super(); this.heatmap = heatmap; this.methods = Arrays.asList(HCL_METHOD, KMEANS_METHOD); setTitle("Clustering by value"); setLogo(IconUtils.getImageIconResourceScaledByHeight(IconNames.LOGO_CLUSTERING, 96)); } @Override public void addPages() { methodPage = new MethodSelectionPage(methods, heatmap); addPage(methodPage); hclPage = new HCLParamsPage(HCL_METHOD); addPage(hclPage); kmeansPage = new KMeansPlusPlusPage(KMEANS_METHOD); addPage(kmeansPage); } @Override public boolean canFinish() { return currentPage == hclPage || currentPage == kmeansPage; } @Override public boolean isLastPage(IWizardPage page) { return currentPage != methodPage; } @Override public IWizardPage getNextPage(IWizardPage currentPage) { if (currentPage == methodPage) { return getMethodConfigPage(); } return null; } private IWizardPage getMethodConfigPage() { ClusteringMethod method = methodPage.getSelectedMethod(); if (method instanceof HierarchicalMethod) { return hclPage; } else if (method instanceof KMeansPlusPlusMethod) { return kmeansPage; } return null; } public ClusteringData getClusterData() { return new MatrixClusteringData( heatmap, methodPage.getClusteringDimension(), methodPage.getAggregationDimension(), methodPage.getClusteringLayer() ); } public MatrixDimensionKey getClusteringDimension() { return methodPage.getClusteringDimension(); } public String getClusteringLayer() { return methodPage.getClusteringLayer(); } public ClusteringMethod getMethod() { return methodPage.getSelectedMethod(); } }