/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.matrix.sort;
import com.google.common.collect.Sets;
import org.gitools.api.analysis.IAggregator;
import org.gitools.api.matrix.*;
import org.gitools.matrix.model.iterable.IdentityMatrixFunction;
import java.util.Set;
public class AggregationFunction extends AbstractMatrixFunction<Double, String> {
private IMatrixLayer<Double> layer;
private IAggregator aggregator;
private IMatrixDimension aggregationDimension;
private Set<String> aggregationIdentifiers;
private IMatrixFunction<Double, Double> transformFunction;
public AggregationFunction(IMatrixLayer<Double> layer, IMatrixDimension aggregationDimension, Set<String> aggregationIdentifiers) {
this(layer, layer.getAggregator(), aggregationDimension, aggregationIdentifiers, new IdentityMatrixFunction<Double>());
}
public AggregationFunction(IMatrixLayer<Double> layer, IAggregator aggregator, IMatrixDimension aggregationDimension) {
this(layer, aggregator, aggregationDimension, Sets.newHashSet(aggregationDimension), new IdentityMatrixFunction<Double>());
}
public AggregationFunction(IMatrixLayer<Double> layer, IAggregator aggregator, IMatrixDimension aggregationDimension, Set<String> aggregationIdentifiers, IMatrixFunction<Double, Double> transformFunction) {
super();
this.layer = layer;
this.aggregator = aggregator;
this.aggregationDimension = aggregationDimension;
this.aggregationIdentifiers = aggregationIdentifiers;
this.transformFunction = transformFunction;
}
public AggregationFunction(IMatrixLayer<Double> layer, IAggregator aggregator, IMatrixDimension aggregationDimension, IMatrixFunction<Double, Double> transformFunction) {
this(layer, aggregator, aggregationDimension, Sets.newHashSet(aggregationDimension), transformFunction);
}
@Override
public Double apply(String value, IMatrixPosition position) {
return aggregator.aggregate(
position.iterate(layer, aggregationDimension.subset(aggregationIdentifiers)).transform(transformFunction)
);
}
}