/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.datasources.biomart.wizard; import org.gitools.datasources.biomart.BiomartService; import org.gitools.datasources.biomart.restful.model.*; import org.gitools.ui.app.datasources.biomart.panel.BiomartAttributeListPanel; import org.gitools.ui.core.Application; import org.gitools.ui.platform.dialog.ExceptionGlassPane; import org.gitools.ui.platform.dialog.MessageStatus; import org.gitools.ui.platform.wizard.AbstractWizardPage; import javax.swing.*; import java.util.List; /** * @noinspection ALL */ public class BiomartAttributeListPage extends AbstractWizardPage { private MartLocation mart; private DatasetInfo dataset; private List<AttributePage> attrPages; private BiomartAttributeListPanel panel; private BiomartService biomartService; private DatasetConfig biomartConfig; private Boolean reloadData; //determine whether update panel data public BiomartAttributeListPage() { } @Override public JComponent createControls() { panel = new BiomartAttributeListPanel(); panel.addAttributeListChangeListener(new BiomartAttributeListPanel.AttributeListChangeListener() { @Override public void listChanged() { setComplete(panel.getAttributeListSize() > 0); } }); return panel; } @Override public void updateControls() { //panel.setAddBtnEnabled(false); if (panel != null && reloadData) { panel.removeAllListAttributes(); } panel.setAttributePages(null); if (panel.getAttributePages() == null) { new Thread(new Runnable() { @Override public void run() { updateControlsThread(); reloadData = false; //To avoid reload data when back button } }).start(); } } private void updateControlsThread() { try { if (attrPages == null || reloadData) { setStatus(MessageStatus.PROGRESS); setMessage("Retrieving available attributes ..."); biomartConfig = biomartService.getConfiguration(dataset); attrPages = biomartConfig.getAttributePages(); } SwingUtilities.invokeAndWait(new Runnable() { @Override public void run() { //panel.setAddBtnEnabled(true); panel.setAttributePages(attrPages); setStatus(MessageStatus.WARN); setMessage("Press [Add...] button to select attributes"); } }); } catch (final Throwable cause) { SwingUtilities.invokeLater(new Runnable() { @Override public void run() { setStatus(MessageStatus.ERROR); setMessage(cause.getClass().getSimpleName() + ": " + cause.getMessage()); ExceptionGlassPane dlg = new ExceptionGlassPane(Application.get(), cause); dlg.setVisible(true); } }); } } /*private void setAttributePages(List<AttributePage> attrPages) { panel.setAttributePages(attrPages); }*/ public void setSource(BiomartService biomartService, MartLocation mart, DatasetInfo ds) { if (this.dataset != null && this.dataset.getName().equals(ds.getName())) { reloadData = false; } else { reloadData = true; } this.biomartService = biomartService; this.mart = mart; this.dataset = ds; } public List<AttributeDescription> getAttributeList() { return panel.getAttributeList(); } public DatasetConfig getBiomartConfig() { return biomartConfig; } }