/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.heatmap.header.wizard.coloredlabels;
import org.gitools.analysis.clustering.annotations.AnnPatClusteringMethod;
import org.gitools.api.matrix.IAnnotations;
import org.gitools.heatmap.HeatmapDimension;
import org.gitools.ui.core.utils.DocumentChangeListener;
import org.gitools.ui.platform.wizard.AbstractWizardPage;
import javax.swing.*;
import javax.swing.event.*;
public class ColoredLabelsSourcePage extends AbstractWizardPage {
private final HeatmapDimension hdim;
private final AnnPatClusteringMethod method;
public ColoredLabelsSourcePage(HeatmapDimension hdim, AnnPatClusteringMethod method) {
this.hdim = hdim;
this.method = method;
initComponents();
ChangeListener optListener = new ChangeListener() {
@Override
public void stateChanged(ChangeEvent e) {
sourceChanged();
}
};
annOpt.addChangeListener(optListener);
patOpt.addChangeListener(optListener);
IAnnotations am = hdim.getAnnotations();
if (am != null && !am.getLabels().isEmpty()) {
annOpt.setSelected(true);
DefaultListModel model = new DefaultListModel();
for (String key : am.getLabels())
model.addElement(key);
annList.setModel(model);
annList.setSelectedIndex(0);
} else {
patOpt.setSelected(true);
annOpt.setEnabled(false);
}
annList.addListSelectionListener(new ListSelectionListener() {
@Override
public void valueChanged(ListSelectionEvent e) {
updateCompleted();
}
});
annSepCb.setModel(new DefaultComboBoxModel(new String[]{", ", "-", " | ", " / ", " > ", "::"}));
annSepCb.setSelectedIndex(0);
patText.getDocument().addDocumentListener(new DocumentChangeListener() {
@Override
protected void update(DocumentEvent e) {
updateCompleted();
}
});
setTitle("Annotations selection");
setComplete(true);
}
private void updateCompleted() {
boolean completed = annOpt.isSelected() && annList.getSelectedIndices().length > 0 || patOpt.isSelected() && patText.getDocument().getLength() > 0;
setComplete(completed);
}
private void sourceChanged() {
boolean annSel = annOpt.isSelected();
annList.setEnabled(annSel);
annSepLabel.setEnabled(annSel);
annSepCb.setEnabled(annSel);
patText.setEnabled(patOpt.isSelected());
}
@Override
public void updateModel() {
super.updateModel();
method.setPattern(getPattern());
}
String getPattern() {
if (patOpt.isSelected()) {
return patText.getText();
}
IAnnotations am = hdim.getAnnotations();
StringBuilder sb = new StringBuilder();
Object[] selectedValues = annList.getSelectedValues();
sb.append("${");
sb.append(selectedValues[0]);
sb.append("}");
for (int i = 1; i < selectedValues.length; i++) {
sb.append(annSepCb.getSelectedItem());
sb.append("${");
sb.append(selectedValues[i]);
sb.append("}");
}
return sb.toString();
}
public String getClusterTitle() {
if (patOpt.isSelected()) {
return patText.getText();
}
IAnnotations am = hdim.getAnnotations();
StringBuilder sb = new StringBuilder();
Object[] indices = annList.getSelectedValues();
sb.append(indices[0]);
for (int i = 1; i < indices.length; i++) {
sb.append(annSepCb.getSelectedItem());
sb.append(indices[i]);
}
return sb.toString();
}
/**
* This method is called from within the constructor to
* initialize the form.
* WARNING: Do NOT modify this code. The content of this method is
* always regenerated by the Form Editor.
*/
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
optGroup = new javax.swing.ButtonGroup();
annOpt = new javax.swing.JRadioButton();
jScrollPane1 = new javax.swing.JScrollPane();
annList = new javax.swing.JList();
patOpt = new javax.swing.JRadioButton();
patText = new javax.swing.JTextField();
jLabel1 = new javax.swing.JLabel();
annSepLabel = new javax.swing.JLabel();
annSepCb = new javax.swing.JComboBox();
optGroup.add(annOpt);
annOpt.setText("Create labels by selecting a set of annotations");
jScrollPane1.setViewportView(annList);
optGroup.add(patOpt);
patOpt.setText("Create labels by using a pattern");
patText.setText("${id}");
jLabel1.setFont(jLabel1.getFont().deriveFont(jLabel1.getFont().getSize() - 2f));
jLabel1.setText("Press Ctrl key while selecting for multiple annotations");
annSepLabel.setText("Separator");
annSepCb.setEditable(true);
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGroup(layout.createSequentialGroup().addGap(24, 24, 24).addComponent(patText, javax.swing.GroupLayout.PREFERRED_SIZE, 544, javax.swing.GroupLayout.PREFERRED_SIZE)).addGroup(layout.createSequentialGroup().addGap(24, 24, 24).addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 544, Short.MAX_VALUE).addComponent(jLabel1).addGroup(layout.createSequentialGroup().addComponent(annSepLabel).addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED).addComponent(annSepCb, javax.swing.GroupLayout.PREFERRED_SIZE, 125, javax.swing.GroupLayout.PREFERRED_SIZE)))).addGroup(layout.createSequentialGroup().addContainerGap().addComponent(annOpt)).addGroup(layout.createSequentialGroup().addContainerGap().addComponent(patOpt))).addContainerGap()));
layout.setVerticalGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGroup(layout.createSequentialGroup().addContainerGap().addComponent(annOpt).addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED).addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 153, Short.MAX_VALUE).addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED).addComponent(jLabel1).addGap(18, 18, 18).addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE).addComponent(annSepLabel).addComponent(annSepCb, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)).addGap(18, 18, 18).addComponent(patOpt).addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED).addComponent(patText, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE).addContainerGap()));
}// </editor-fold>//GEN-END:initComponents
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JList annList;
private javax.swing.JRadioButton annOpt;
private javax.swing.JComboBox annSepCb;
private javax.swing.JLabel annSepLabel;
private javax.swing.JLabel jLabel1;
private javax.swing.JScrollPane jScrollPane1;
private javax.swing.ButtonGroup optGroup;
private javax.swing.JRadioButton patOpt;
private javax.swing.JTextField patText;
// End of variables declaration//GEN-END:variables
}