/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.heatmap.decorator.impl;
import org.gitools.api.matrix.IMatrix;
import org.gitools.api.matrix.IMatrixLayer;
import org.gitools.api.matrix.IMatrixPosition;
import org.gitools.heatmap.decorator.Decoration;
import org.gitools.heatmap.decorator.Decorator;
import org.gitools.utils.colorscale.impl.BinaryColorScale;
import org.gitools.utils.cutoffcmp.CutoffCmp;
import org.gitools.utils.formatter.ITextFormatter;
import org.gitools.utils.xml.adapter.ColorXmlAdapter;
import org.gitools.utils.xml.adapter.CutoffCmpXmlAdapter;
import javax.xml.bind.annotation.*;
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
import java.awt.*;
import java.util.ArrayList;
import java.util.List;
@XmlAccessorType(XmlAccessType.NONE)
@XmlRootElement(name = "binary")
public class BinaryDecorator extends Decorator<BinaryColorScale> {
public static final String PROPERTY_COMPARATOR = "comparator";
public static final String PROPERTY_CUTOFF = "cutoff";
public static final String PROPERTY_COLOR = "color";
public static final String PROPERTY_NON_SIGNIFICANT_COLOR = "nonSignificantColor";
public static final String PROPERTY_EMPTY_COLOR = "emptyColor";
@XmlTransient
private BinaryColorScale scale;
@XmlTransient
private NonEventToNullFunction<BinaryColorScale> binaryEvents;
public BinaryDecorator() {
super();
this.scale = new BinaryColorScale();
}
public BinaryColorScale getScale() {
return scale;
}
public void setScale(BinaryColorScale scale) {
this.scale = scale;
}
@XmlElement(name = "comparator")
@XmlJavaTypeAdapter(CutoffCmpXmlAdapter.class)
public CutoffCmp getComparator() {
return CutoffCmp.getFromName(getScale().getComparator());
}
public void setComparator(CutoffCmp cutoffCmp) {
CutoffCmp old = getComparator();
getScale().setComparator(cutoffCmp.getShortName());
firePropertyChange(PROPERTY_COMPARATOR, old, cutoffCmp);
}
@XmlElement(name = "cutoff")
public double getCutoff() {
return getScale().getCutoff();
}
public void setCutoff(double cutoff) {
double old = getScale().getCutoff();
getScale().setCutoff(cutoff);
firePropertyChange(PROPERTY_CUTOFF, old, cutoff);
}
@XmlElement(name = "true-color")
@XmlJavaTypeAdapter(ColorXmlAdapter.class)
public Color getColor() {
return getScale().getMaxColor();
}
public void setColor(Color color) {
Color old = getScale().getMaxColor();
getScale().setMaxColor(color);
firePropertyChange(PROPERTY_COLOR, old, color);
}
@XmlElement(name = "false-color")
@XmlJavaTypeAdapter(ColorXmlAdapter.class)
public Color getNonSignificantColor() {
return getScale().getMinColor();
}
public void setNonSignificantColor(Color color) {
Color old = getScale().getMinColor();
this.getScale().setMinColor(color);
firePropertyChange(PROPERTY_NON_SIGNIFICANT_COLOR, old, color);
}
@XmlElement(name = "empty-color")
@XmlJavaTypeAdapter(ColorXmlAdapter.class)
public Color getEmptyColor() {
return getScale().getEmptyColor();
}
public void setEmptyColor(Color color) {
Color old = getScale().getEmptyColor();
getScale().setEmptyColor(color);
firePropertyChange(PROPERTY_EMPTY_COLOR, old, color);
}
@Override
public void decorate(Decoration decoration, ITextFormatter textFormatter, IMatrix matrix, IMatrixLayer layer, String... identifiers) {
Object value = matrix.get(layer, identifiers);
double v = toDouble(value);
if (Double.isNaN(v)) {
decoration.setBgColor(getScale().getEmptyColor());
return;
}
final Color c = getScale().valueColor(v);
decoration.setBgColor(c);
if (isShowValue()) {
decoration.setValue(textFormatter.format(value));
}
}
@Override
public NonEventToNullFunction getDefaultEventFunction() {
if (binaryEvents == null) {
binaryEvents = new NonEventToNullFunction<BinaryColorScale>(scale, "Binary events") {
@Override
public Double apply(Double value, IMatrixPosition position) {
this.position = position;
boolean satisfies = value != null && CutoffCmp.getFromName(getColorScale().getComparator()).compare(value, getColorScale().getCutoff());
return satisfies ? 1.0 : null;
}
@Override
public String getDescription() {
return ("All 'true' values are events: " + getColorScale().getComparator() +
" " + getColorScale().getCutoff());
}
};
}
return binaryEvents;
}
@Override
public List<NonEventToNullFunction> getEventFunctionAlternatives() {
List<NonEventToNullFunction> list = new ArrayList<>();
list.add(binaryEvents);
return list;
}
}