/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions;
import org.gitools.plugins.mutex.MutualExclusiveAnalysisAction;
import org.gitools.plugins.mutex.actions.MutualExclusiveSortAction;
import org.gitools.ui.app.actions.analysis.*;
import org.gitools.ui.app.actions.data.*;
import org.gitools.ui.app.actions.data.analysis.ViewEnrichmentModuleDataAction;
import org.gitools.ui.app.actions.edit.*;
import org.gitools.ui.app.actions.file.*;
import org.gitools.ui.app.actions.toolbar.HeatmapCreateImageAction;
import org.gitools.ui.app.actions.toolbar.HeatmapSearchAction;
import org.gitools.ui.app.svg.ExportHeatmapSVGAction;
import org.gitools.ui.core.actions.ActionManager;
import org.gitools.ui.core.actions.BaseAction;
import static org.gitools.api.matrix.MatrixDimensionKey.COLUMNS;
import static org.gitools.api.matrix.MatrixDimensionKey.ROWS;
public class Actions {
// Open
public static final BaseAction open = new OpenFromFileSystemActionSet();
public static final BaseAction openBrowse = new OpenFromFilesystemBrowseAction();
public static final BaseAction openGenomeSpace = new OpenFromGenomeSpaceAction();
public static final BaseAction openURL = new OpenFromURLAction();
// Save
public static final BaseAction saveAction = new SaveAction();
public static final BaseAction saveAsAction = new SaveAsAction();
// Exit
public static final BaseAction exitAction = new ExitAction();
//Edit
public static final BaseAction createBookmarkAction = new CreateBookmarkAction();
public static final BaseAction bookmarksDropdown = new BookmarksDropdown();
// Import
public static final BaseAction importBioMartModulesAction = new ImportBiomartModulesAction();
public static final BaseAction importBioMartTableAction = new ImportBiomartTableAction();
public static final BaseAction importKeggModulesAction = new ImportKeggModulesAction();
public static final BaseAction importGoModulesAction = new ImportGoModulesAction();
// Export
public static final BaseAction exportAnnotationAction = new ExportAnnotationAction();
public static final BaseAction exportMatrixAction = new ExportMatrixAction();
public static final BaseAction exportTableAction = new ExportTableAction();
public static final BaseAction exportHeatmapImageAction = new ExportHeatmapImageAction();
public static final BaseAction exportHeatmapSVGAction = new ExportHeatmapSVGAction();
public static final BaseAction exportHierarchicalTreeImageAction = new ExportHierarchicalTreeImageAction();
public static final BaseAction exportScaleImageAction = new ExportScaleImageAction();
// Other
public static final BaseAction openIntegrativeGenomicViewerAction = new OpenIntegrativeGenomicViewerAction();
public static final BaseAction selectAllAction = new SelectAllAction();
public static final BaseAction selectLabelHeaderAction = new SelectLabelHeaderAction();
public static final BaseAction unselectLabelHeaderAction = new UnselectLabelHeaderAction();
public static final BaseAction unselectAllAction = new UnselectAllAction();
public static final BaseAction addRowHeader = new AddHeaderAction(ROWS);
public static final BaseAction addColumnHeader = new AddHeaderAction(COLUMNS);
public static final BaseAction copyToClipboardSelectedLabelHeader = new CopyToClipboardSelectedLabelHeaderAction();
public static final BaseAction filterRowsByLabel = new FilterByAnnotationsAction(ROWS);
public static final BaseAction filterColumnsByLabel = new FilterByAnnotationsAction(COLUMNS);
public static final BaseAction filterRowsByValue = new FilterByValueAction(ROWS);
public static final BaseAction filterColumnsByValue = new FilterByValueAction(COLUMNS);
public static final BaseAction showAllRowsAction = new ShowAllAction(ROWS);
public static final BaseAction showAllColumns = new ShowAllAction(COLUMNS);
public static final BaseAction hideSelectedColumns = new HideSelectionAction(COLUMNS);
public static final BaseAction hideThisLabelHeaderAction = new HideThisLabelHeaderAction();
public static final BaseAction hideGreaterThanHeaderAction = new HideNumericHeaderAction(true, "greater");
public static final BaseAction hideSmallerThanHeaderAction = new HideNumericHeaderAction(false, "smaller");
public static final BaseAction sortByRowsAnnotation = new SortByAnnotationAction(ROWS);
public static final BaseAction sortByColumnsAnnotation = new SortByAnnotationAction(COLUMNS);
public static final BaseAction sortByPredefinedListRowsAction = new SortByPredefinedListAction(ROWS);
public static final BaseAction sortByPredefinedListColumnsAction = new SortByPredefinedListAction(COLUMNS);
public static final BaseAction sortByHeader = new SortByHeaderAction();
public static final BaseAction invertOrder = new InvertOrderAction();
public static final BaseAction sortColumnsByValue = new SortByValueAction(COLUMNS);
public static final BaseAction sortRowsByValue = new SortByValueAction(ROWS);
public static final BaseAction sortColumnsByMutualExclusion = new MutualExclusiveSortAction(COLUMNS);
public static final BaseAction sortRowsByMutualExclusion = new MutualExclusiveSortAction(ROWS);
public static final BaseAction hideSelectedRowsAction = new HideSelectionAction(ROWS);
public static final BaseAction showOnlyHeaderAction = new ShowOnlyLabelHeaderAction();
public static final BaseAction clusteringAction = new ClusteringAction();
public static final BaseAction mutexAnalysisAction = new MutualExclusiveAnalysisAction();
public static final BaseAction enrichment = new EnrichmentAnalysisAction();
public static final BaseAction combinations = new CombinationsAction();
public static final BaseAction correlations = new CorrelationsAction();
public static final BaseAction overlapping = new OverlappingsAction();
public static final BaseAction groupComparison = new GroupComparisonAction();
public static final BaseAction snapshotAction = new HeatmapCreateImageAction();
public static final BaseAction searchRowsAction = new HeatmapSearchAction(ROWS);
public static final BaseAction addNewLayersFromFile = new AddNewLayersFromFileAction();
public static final BaseAction addNewLayersFromTransformation = new AddNewLayerFromDataTransformation();
public static final BaseAction heatmapSettings = new HeatmapSettingsAction();
public static final BaseAction viewEnrichmentModuleData = new ViewEnrichmentModuleDataAction();
private Actions() {
}
public static void init() {
ActionManager am = ActionManager.getDefault();
am.addRootAction(MenuActionSet.INSTANCE);
am.addRootAction(ToolBarActionSet.INSTANCE);
}
}