/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.analysis.htest.editor;
import org.gitools.analysis.htest.enrichment.EnrichmentAnalysis;
import org.gitools.analysis.htest.enrichment.EnrichmentProcessor;
import org.gitools.analysis.htest.enrichment.format.EnrichmentAnalysisFormat;
import org.gitools.api.matrix.IMatrix;
import org.gitools.heatmap.Heatmap;
import javax.enterprise.context.ApplicationScoped;
@ApplicationScoped
public class EnrichmentAnalysisEditor extends AbstractHtestAnalysisEditor<EnrichmentAnalysis> {
public EnrichmentAnalysisEditor(EnrichmentAnalysis analysis) {
super(analysis, "/vm/analysis/enrichment/analysis_details.vm", EnrichmentAnalysisFormat.EXTENSION);
}
protected Heatmap createResultsHeatmap(EnrichmentAnalysis analysis) {
IMatrix results = analysis.getResults().get();
results.setMetadata(EnrichmentAnalysis.CACHE_KEY_ENHRICHMENT, analysis);
if (results instanceof Heatmap) {
return (Heatmap) results;
}
return EnrichmentProcessor.createResultHeatmapFromMatrix(analysis.getTitle(), analysis.getTestConfig(), results);
}
}