/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.batch.tools;
import org.gitools.ui.app.commands.AddHeaderColoredLabelsCommand;
import org.gitools.ui.core.commands.Command;
import org.gitools.ui.core.commands.tools.HeaderTool;
import org.kohsuke.args4j.Option;
import java.util.List;
public class AddHeaderColoredLabelsTool extends HeaderTool {
@Option(name = "-c", aliases = "--color", metaVar = "<color>", required = false,
usage = "A Hex color corresponding to the string for id: #FF0000")
private List<String> colors;
@Option(name = "-v", aliases = "--value", metaVar = "<value>", required = false,
usage = "A value corresponding to a color")
private List<String> ids;
@Option(name = "-n", aliases = "--no-auto-generate", required = false,
usage = "Specify if auto color generation is not desired.")
private boolean noAutoGenerate;
@Option(name = "-t", aliases = "--text-visible", required = false,
usage = "Set for visible text labels")
private boolean textVisible;
@Option(name = "-s", aliases = "--sort", metaVar = "<sort>", required = false,
usage = "Sort according to header. Specify either asc[ending] or desc[ending].")
protected String sort;
public AddHeaderColoredLabelsTool() {
super();
}
@Override
public String getName() {
return "add-header-colored-labels";
}
@Override
protected Command newJob() {
return new AddHeaderColoredLabelsCommand(heatmap, dimensionKey, pattern, colors, ids, !noAutoGenerate, textVisible, sort);
}
}