/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.file;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.api.matrix.IAnnotations;
import org.gitools.heatmap.Heatmap;
import org.gitools.matrix.filter.PatternFunction;
import org.gitools.ui.app.wizard.ExportHeatmapLabelsWizard;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.actions.HeatmapAction;
import org.gitools.ui.platform.icons.IconNames;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import org.gitools.ui.platform.wizard.WizardDialog;
import java.awt.event.ActionEvent;
import java.awt.event.KeyEvent;
import java.io.*;
import static com.google.common.base.Predicates.in;
import static com.google.common.base.Predicates.not;
import static com.google.common.collect.Iterables.filter;
import static com.google.common.collect.Iterables.transform;
import static com.google.common.collect.Sets.newHashSet;
public class ExportAnnotationAction extends HeatmapAction {
public ExportAnnotationAction() {
super("Annotations...");
setDesc("Export row or column annotations");
setMnemonic(KeyEvent.VK_A);
setSmallIconFromResource(IconNames.empty16);
}
@Override
public void actionPerformed(ActionEvent e) {
final Heatmap hm = getHeatmap();
final ExportHeatmapLabelsWizard wiz = new ExportHeatmapLabelsWizard(hm);
WizardDialog dlg = new WizardDialog(Application.get(), wiz);
dlg.open();
if (dlg.isCancelled()) {
return;
}
final File file = wiz.getSavePage().getPathAsFile();
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) {
try {
monitor.begin("Exporting labels ...", 1);
monitor.info("File: " + file.getName());
PrintWriter pw = new PrintWriter(new BufferedWriter(new FileWriter(file)));
Iterable<String> identifiers = null;
IAnnotations annMatrix = null;
switch (wiz.getWhichLabels()) {
case VISIBLE_ROWS:
identifiers = hm.getRows();
annMatrix = hm.getRows().getAnnotations();
break;
case VISIBLE_COLUMNS:
identifiers = hm.getColumns();
annMatrix = hm.getColumns().getAnnotations();
break;
case HIDDEN_ROWS:
identifiers = filter(hm.getContents().getRows(), not(in(newHashSet(hm.getRows()))));
annMatrix = hm.getRows().getAnnotations();
break;
case HIDDEN_COLUMNS:
identifiers = filter(hm.getContents().getColumns(), not(in(newHashSet(hm.getColumns()))));
annMatrix = hm.getColumns().getAnnotations();
break;
}
pw.println(wiz.getPattern().replaceAll("[\\$\\{\\}]", ""));
for (String identifier : transform(identifiers, new PatternFunction(wiz.getPattern(), annMatrix))) {
pw.println(identifier);
}
pw.close();
} catch (IOException ex) {
monitor.exception(ex);
}
}
});
Application.get().showNotification("Annotation exported.", 2000);
}
}