/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.actions.data; import com.google.common.base.Function; import org.gitools.api.analysis.IProgressMonitor; import org.gitools.heatmap.HeatmapDimension; import org.gitools.heatmap.MatrixViewSorter; import org.gitools.heatmap.header.HeatmapDecoratorHeader; import org.gitools.heatmap.header.HeatmapHeader; import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader; import org.gitools.ui.core.Application; import org.gitools.ui.core.HeatmapPosition; import org.gitools.ui.core.actions.HeatmapAction; import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction; import org.gitools.ui.platform.progress.JobRunnable; import org.gitools.ui.platform.progress.JobThread; import java.awt.event.ActionEvent; import static org.gitools.api.matrix.SortDirection.ASCENDING; import static org.gitools.api.matrix.SortDirection.DESCENDING; public class SortByHeaderAction extends HeatmapAction implements IHeatmapHeaderAction { private HeatmapHeader header; public SortByHeaderAction() { super("Sort by header"); } @Override public void actionPerformed(ActionEvent e) { if (header == null) { return; } String sortedBy = header.isSortAscending() ? ASCENDING.toString() : DESCENDING.toString(); JobThread.execute(Application.get(), new JobRunnable() { @Override public void run(IProgressMonitor monitor) { monitor.begin("Sorting ...", 1); HeatmapDimension dimension = header.getHeatmapDimension(); MatrixViewSorter.sortByLabel(dimension, header.isSortAscending() ? ASCENDING : DESCENDING, header.getSortAnnotationPattern(), header instanceof HeatmapDecoratorHeader); header.setSortAscending(!header.isSortAscending()); } }); Application.get().showNotification("Annotation sorting applied (" + sortedBy + ")"); } @Override public void onConfigure(HeatmapHeader header, HeatmapPosition position) { this.header = header; setEnabled(!(header instanceof HierarchicalClusterHeatmapHeader)); if (header instanceof HeatmapDecoratorHeader) { ((HeatmapDecoratorHeader) header).setSortLabel(position.getHeaderAnnotation()); } HeatmapDimension sortDimension = header.getHeatmapDimension(); String dimension = sortDimension.getId().getLabel(); String which = sortDimension.getSelected().size() > 0 ? sortDimension.getSelected().size() + "" : "all"; setName("<html><i>Sort</i> " + which + " " + dimension + "s " + (header.isSortAscending() ? "asc." : "des.") + " by <b>" + header.getTitle() + "</b></html>"); } private class ToLowerCaseFunction implements Function<String, String> { private Function<String, String> innerFunction; public ToLowerCaseFunction(Function<String, String> innerFunction) { this.innerFunction = innerFunction; } @Override public String apply(String input) { String out = innerFunction.apply(input); return (out == null ? null : out.toLowerCase()); } } }