/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.data;
import com.google.common.base.Function;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.heatmap.HeatmapDimension;
import org.gitools.heatmap.MatrixViewSorter;
import org.gitools.heatmap.header.HeatmapDecoratorHeader;
import org.gitools.heatmap.header.HeatmapHeader;
import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.HeatmapPosition;
import org.gitools.ui.core.actions.HeatmapAction;
import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import java.awt.event.ActionEvent;
import static org.gitools.api.matrix.SortDirection.ASCENDING;
import static org.gitools.api.matrix.SortDirection.DESCENDING;
public class SortByHeaderAction extends HeatmapAction implements IHeatmapHeaderAction {
private HeatmapHeader header;
public SortByHeaderAction() {
super("Sort by header");
}
@Override
public void actionPerformed(ActionEvent e) {
if (header == null) {
return;
}
String sortedBy = header.isSortAscending() ? ASCENDING.toString() : DESCENDING.toString();
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) {
monitor.begin("Sorting ...", 1);
HeatmapDimension dimension = header.getHeatmapDimension();
MatrixViewSorter.sortByLabel(dimension,
header.isSortAscending() ? ASCENDING : DESCENDING,
header.getSortAnnotationPattern(),
header instanceof HeatmapDecoratorHeader);
header.setSortAscending(!header.isSortAscending());
}
});
Application.get().showNotification("Annotation sorting applied (" + sortedBy + ")");
}
@Override
public void onConfigure(HeatmapHeader header, HeatmapPosition position) {
this.header = header;
setEnabled(!(header instanceof HierarchicalClusterHeatmapHeader));
if (header instanceof HeatmapDecoratorHeader) {
((HeatmapDecoratorHeader) header).setSortLabel(position.getHeaderAnnotation());
}
HeatmapDimension sortDimension = header.getHeatmapDimension();
String dimension = sortDimension.getId().getLabel();
String which = sortDimension.getSelected().size() > 0 ? sortDimension.getSelected().size() + "" : "all";
setName("<html><i>Sort</i> " + which + " " + dimension + "s " + (header.isSortAscending() ? "asc." : "des.") + " by <b>" + header.getTitle() + "</b></html>");
}
private class ToLowerCaseFunction implements Function<String, String> {
private Function<String, String> innerFunction;
public ToLowerCaseFunction(Function<String, String> innerFunction) {
this.innerFunction = innerFunction;
}
@Override
public String apply(String input) {
String out = innerFunction.apply(input);
return (out == null ? null : out.toLowerCase());
}
}
}