TrailingTrimmerReadFilterTest.java

package fr.ens.biologie.genomique.eoulsan.bio.readsfilters;

import static org.junit.Assert.assertTrue;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertEquals;

import org.junit.Test;

import fr.ens.biologie.genomique.eoulsan.EoulsanException;
import fr.ens.biologie.genomique.eoulsan.bio.ReadSequence;

public class TrailingTrimmerReadFilterTest {
  @Test
  public void TrailingTirmmertest() throws EoulsanException {
  ReadFilter filter = new TrailingTrimmerReadFilter();

  filter.setParameter("arguments", "33");
  filter.init();
  assertFalse(filter.accept(null));
  ReadSequence read =
      new ReadSequence(0, "read1", "AGG", "CBA");
  assertTrue(filter.accept(read));
  assertEquals("read1", read.getName());
  assertEquals("AG", read.getSequence());
  assertEquals("CB", read.getQuality());
  
  
  filter = new TrailingTrimmerReadFilter();
  filter.setParameter("arguments", "33");
  filter.init();
  read = new ReadSequence(0, "read2", "AAGGCTT", "CABA;:9");
  assertTrue(filter.accept(read));
  assertEquals("read2", read.getName());
  assertEquals("AAG", read.getSequence());
  assertEquals("CAB", read.getQuality());
  assertFalse(filter.accept(null));
  }
}