/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.core.workflow; import static com.google.common.base.Preconditions.checkNotNull; import java.io.Serializable; import java.util.HashMap; import java.util.HashSet; import java.util.Map; import java.util.Set; import com.google.common.collect.ImmutableMap; import com.google.common.collect.Multimap; import fr.ens.biologie.genomique.eoulsan.core.InputPort; import fr.ens.biologie.genomique.eoulsan.data.Data; /** * This class define a data product that return data/port couples with only data * with the same name. * @author Laurent Jourdren * @since 2.0 */ class MatchDataProduct implements DataProduct, Serializable { private static final long serialVersionUID = -3335375092653861359L; public static final String DATAPRODUCT_NAME = "match"; @Override public String getName() { return DATAPRODUCT_NAME; } @Override public void configure(String conf) { // Nothing to do } @Override public Set<ImmutableMap<InputPort, Data>> makeProduct( final StepInputPorts inputPorts, final Multimap<InputPort, Data> inputTokens) { checkNotNull(inputPorts, "inputPorts argument cannot be null"); checkNotNull(inputTokens, "inputTokens argument cannot be null"); final Set<ImmutableMap<InputPort, Data>> result = new HashSet<>(); final int portCount = inputPorts.size(); final Map<String, Map<InputPort, Data>> map = new HashMap<>(); // Put tokens data in a multimap for (Map.Entry<InputPort, Data> e : inputTokens.entries()) { final String dataName = e.getValue().getName(); final Map<InputPort, Data> portDataMap; if (map.containsKey(dataName)) { portDataMap = map.get(dataName); } else { portDataMap = new HashMap<>(); map.put(dataName, portDataMap); } portDataMap.put(e.getKey(), e.getValue()); } // Create the result object for (Map.Entry<String, Map<InputPort, Data>> e : map.entrySet()) { final Map<InputPort, Data> portDataMap = e.getValue(); // Do not handle case where data for ports are missing if (portDataMap.size() != portCount) { continue; } final ImmutableMap.Builder<InputPort, Data> imb = ImmutableMap.builder(); for (Map.Entry<InputPort, Data> e2 : portDataMap.entrySet()) { imb.put(e2); } result.add(imb.build()); } return result; } }