/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan; import java.io.File; import java.io.IOException; import java.net.URI; import java.util.logging.FileHandler; import java.util.logging.Handler; import org.apache.commons.cli.OptionBuilder; import org.apache.commons.cli.Options; /** * Main class in local mode. * @since 1.0 * @author Laurent Jourdren */ public final class MainCLI extends Main { private static final String LAUNCH_MODE_NAME = "local"; /** * Create options for command line * @return an Options object */ @Override @SuppressWarnings("static-access") protected Options makeOptions() { // create Options object final Options options = super.makeOptions(); // eoulsan.sh shell script options options.addOption(OptionBuilder.withArgName("path").hasArg() .withDescription("JAVA_HOME path").create('j')); options.addOption(OptionBuilder.withArgName("size").hasArg() .withDescription("maximal memory usage for JVM in MB (2048 by default)") .create('m')); options.addOption(OptionBuilder.withArgName("args").hasArg() .withDescription("JVM arguments (-server by default)").create('J')); options.addOption(OptionBuilder.withArgName("path").hasArg() .withDescription("JVM working directory").create('w')); options.addOption(OptionBuilder.withArgName("classpath").hasArg() .withDescription("additional classpath for eoulsan plugins") .create('p')); return options; } @Override protected void initializeRuntime(final Settings settings) { LocalEoulsanRuntime.newEoulsanRuntime(settings); } @Override protected String getHelpEoulsanCommand() { return Globals.APP_NAME_LOWER_CASE; } @Override protected Handler getLogHandler(final URI logFile) throws IOException { if (logFile == null) { throw new NullPointerException("The log file is null"); } final File file = new File(logFile); final File parentFile = file.getParentFile(); // Create parent directory if necessary if (parentFile != null && !parentFile.exists()) { if (!parentFile.mkdirs()) { throw new IOException("Unable to create directory " + parentFile + " for log file:" + logFile); } } return new FileHandler(file.getAbsolutePath()); } // // Constructor // /** * Constructor. * @param args command line arguments */ protected MainCLI(final String[] args) { super(LAUNCH_MODE_NAME, args); } }