/*
* Eoulsan development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public License version 2.1 or
* later and CeCILL-C. This should be distributed with the code.
* If you do not have a copy, see:
*
* http://www.gnu.org/licenses/lgpl-2.1.txt
* http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt
*
* Copyright for this code is held jointly by the Genomic platform
* of the Institut de Biologie de l'École normale supérieure and
* the individual authors. These should be listed in @author doc
* comments.
*
* For more information on the Eoulsan project and its aims,
* or to join the Eoulsan Google group, visit the home page
* at:
*
* http://outils.genomique.biologie.ens.fr/eoulsan
*
*/
package fr.ens.biologie.genomique.eoulsan;
import java.io.File;
import java.io.IOException;
import java.net.URI;
import java.util.logging.FileHandler;
import java.util.logging.Handler;
import org.apache.commons.cli.OptionBuilder;
import org.apache.commons.cli.Options;
/**
* Main class in local mode.
* @since 1.0
* @author Laurent Jourdren
*/
public final class MainCLI extends Main {
private static final String LAUNCH_MODE_NAME = "local";
/**
* Create options for command line
* @return an Options object
*/
@Override
@SuppressWarnings("static-access")
protected Options makeOptions() {
// create Options object
final Options options = super.makeOptions();
// eoulsan.sh shell script options
options.addOption(OptionBuilder.withArgName("path").hasArg()
.withDescription("JAVA_HOME path").create('j'));
options.addOption(OptionBuilder.withArgName("size").hasArg()
.withDescription("maximal memory usage for JVM in MB (2048 by default)")
.create('m'));
options.addOption(OptionBuilder.withArgName("args").hasArg()
.withDescription("JVM arguments (-server by default)").create('J'));
options.addOption(OptionBuilder.withArgName("path").hasArg()
.withDescription("JVM working directory").create('w'));
options.addOption(OptionBuilder.withArgName("classpath").hasArg()
.withDescription("additional classpath for eoulsan plugins")
.create('p'));
return options;
}
@Override
protected void initializeRuntime(final Settings settings) {
LocalEoulsanRuntime.newEoulsanRuntime(settings);
}
@Override
protected String getHelpEoulsanCommand() {
return Globals.APP_NAME_LOWER_CASE;
}
@Override
protected Handler getLogHandler(final URI logFile) throws IOException {
if (logFile == null) {
throw new NullPointerException("The log file is null");
}
final File file = new File(logFile);
final File parentFile = file.getParentFile();
// Create parent directory if necessary
if (parentFile != null && !parentFile.exists()) {
if (!parentFile.mkdirs()) {
throw new IOException("Unable to create directory "
+ parentFile + " for log file:" + logFile);
}
}
return new FileHandler(file.getAbsolutePath());
}
//
// Constructor
//
/**
* Constructor.
* @param args command line arguments
*/
protected MainCLI(final String[] args) {
super(LAUNCH_MODE_NAME, args);
}
}