/*
* Eoulsan development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public License version 2.1 or
* later and CeCILL-C. This should be distributed with the code.
* If you do not have a copy, see:
*
* http://www.gnu.org/licenses/lgpl-2.1.txt
* http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt
*
* Copyright for this code is held jointly by the Genomic platform
* of the Institut de Biologie de l'École normale supérieure and
* the individual authors. These should be listed in @author doc
* comments.
*
* For more information on the Eoulsan project and its aims,
* or to join the Eoulsan Google group, visit the home page
* at:
*
* http://outils.genomique.biologie.ens.fr/eoulsan
*
*/
package fr.ens.biologie.genomique.eoulsan.core.workflow;
import static com.google.common.base.Preconditions.checkState;
import java.io.Serializable;
import java.util.Set;
import com.google.common.base.Strings;
import com.google.common.collect.ImmutableMap;
import com.google.common.collect.Multimap;
import fr.ens.biologie.genomique.eoulsan.EoulsanException;
import fr.ens.biologie.genomique.eoulsan.core.InputPort;
import fr.ens.biologie.genomique.eoulsan.data.Data;
/**
* This class define an auto configurable data product.
* @author Laurent Jourdren
* @since 2.0
*/
class DefaultDataProduct implements DataProduct, Serializable {
private static final long serialVersionUID = -4521747867897781954L;
private static final String DATAPRODUCT_NAME = "autoconf";
private DataProduct dataproduct;
@Override
public String getName() {
return dataproduct == null ? DATAPRODUCT_NAME : this.dataproduct.getName();
}
@Override
public void configure(final String conf) throws EoulsanException {
checkState(dataproduct == null, "configure() has been already called");
final String s = Strings.nullToEmpty(conf).trim().toLowerCase();
switch (s) {
case MatchDataProduct.DATAPRODUCT_NAME:
this.dataproduct = new MatchDataProduct();
break;
case CrossDataProduct.DATAPRODUCT_NAME:
case "":
this.dataproduct = new CrossDataProduct();
break;
default:
throw new EoulsanException("Unknown data product method: " + conf);
}
this.dataproduct.configure(conf);
}
@Override
public Set<ImmutableMap<InputPort, Data>> makeProduct(
final StepInputPorts inputPorts,
final Multimap<InputPort, Data> inputTokens) {
checkState(dataproduct != null, "configure() has not been called");
return this.dataproduct.makeProduct(inputPorts, inputTokens);
}
}