/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.data.protocols; import java.io.File; import java.io.IOException; import java.io.OutputStream; import java.util.List; import fr.ens.biologie.genomique.eoulsan.data.DataFile; import fr.ens.biologie.genomique.eoulsan.data.DataFileMetadata; import fr.ens.biologie.genomique.eoulsan.util.FileUtils; /** * This class is an abstract Protocol class that implements generic * getIn/OutputStream with length. * @since 1.0 * @author Laurent Jourdren */ abstract class AbstractDataProtocol implements DataProtocol { @Override public String getSourceFilename(final String source) { final int lastSlashPos = source.lastIndexOf(DataFile.separatorChar); if (lastSlashPos == -1) { return source; } return source.substring(lastSlashPos + 1); } @Override public DataFile getDataFileParent(final DataFile src) { if (src == null) { return null; } final String source = src.getSource(); final int nameLen = src.getName().length(); final int sourceLen = source.length(); final int parentSrcLen = sourceLen - nameLen - 1; return new DataFile( source.substring(0, parentSrcLen < 0 ? 0 : parentSrcLen)); } @Override public OutputStream putData(final DataFile src, final DataFileMetadata md) throws IOException { if (!canWrite()) { throw new IOException("Writing is not allowed for the source: " + src); } return putData(src); } @Override public void putData(final DataFile src, final DataFile dest) throws IOException { if (src == null) { throw new NullPointerException("The source of the data to put is null"); } if (dest == null) { throw new NullPointerException( "The destination of the data to put is null"); } final DataFileMetadata mdSrc = src.getMetaData(); FileUtils.copy(src.getProtocol().getData(src), dest.getProtocol().putData(dest, mdSrc)); } @Override public File getSourceAsFile(final DataFile src) { if (src == null || src.getSource() == null) { throw new NullPointerException("The source is null."); } return null; } @Override public void mkdir(final DataFile dir) throws IOException { throw new IOException("The mkdir() method is not supported by the " + getName() + " protocol"); } @Override public void mkdirs(final DataFile dir) throws IOException { throw new IOException("The mkdir() method is not supported by the " + getName() + " protocol"); } @Override public boolean canMkdir() { return false; } @Override public void symlink(final DataFile target, final DataFile link) throws IOException { throw new IOException("The symlink() method is not supported by the " + getName() + " protocol"); } @Override public boolean canSymlink() { return false; } @Override public void delete(final DataFile file, final boolean recursive) throws IOException { throw new IOException("The delete() method is not supported by the " + getName() + " protocol"); } @Override public boolean canDelete() { return false; } @Override public List<DataFile> list(final DataFile file) throws IOException { throw new IOException( "The list() method is not supported by the " + getName() + " protocol"); } @Override public boolean canList() { return false; } @Override public boolean canRename() { return false; } @Override public void rename(final DataFile oldName, final DataFile newName) throws IOException { throw new IOException("The rename() method is not supported by the " + getName() + " protocol"); } }