/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.checkers; import java.util.Set; import fr.ens.biologie.genomique.eoulsan.EoulsanException; import fr.ens.biologie.genomique.eoulsan.core.Parameter; import fr.ens.biologie.genomique.eoulsan.data.Data; import fr.ens.biologie.genomique.eoulsan.data.DataFormat; /** * This interface define a checker. * @since 1.0 * @author Laurent Jourdren */ public interface Checker { /** * Get the name of the checker. * @return the name of the checker */ String getName(); /** * Get format related to the checker. * @return a DataFormat object */ DataFormat getFormat(); /** * Set the parameters of the checker to configure the checker. * @param stepParameters parameters of the step * @throws EoulsanException if a parameter is invalid */ void configure(Set<Parameter> stepParameters) throws EoulsanException; /** * Launch the check. * @param data data to check * @param checkInfo object that contains data shared between the checkers * @throws EoulsanException if an error occurs while executing step */ boolean check(Data data, CheckStore checkInfo) throws EoulsanException; /** * Get the list of Checker required to run before this checker. * @return a list of DataFormat that are checked by the required checkers */ Set<DataFormat> getCheckersRequired(); }