/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.bio.expressioncounters; /** * This enum defines the overlap mode for the Expression Counter. * @since 1.2 * @author Laurent Jourdren */ public enum OverlapMode { UNION("union"), INTERSECTION_STRICT("intersection-strict"), INTERSECTION_NONEMPTY("intersection-nonempty"); private final String name; // // Getters // /** * Get the name of strand usage * @return a string with the name of the strand usage */ public String getName() { return this.name; } // // Static methods // /** * Get the OverlapMode from its name. * @param name name of the overlap mode * @return a OverlapMode or null if no OverlapMode found for the name */ public static OverlapMode getOverlapModeFromName(final String name) { if (name == null) { return null; } final String lowerName = name.trim().toLowerCase(); for (OverlapMode om : OverlapMode.values()) { if (om.getName().toLowerCase().equals(lowerName)) { return om; } } return null; } // // Constructor // /** * Constructor. * @param name name of the overlap mode */ OverlapMode(final String name) { this.name = name; } }