/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.core.workflow; import java.io.Serializable; import java.util.Collections; import java.util.HashSet; import java.util.Set; import fr.ens.biologie.genomique.eoulsan.EoulsanRuntime; import fr.ens.biologie.genomique.eoulsan.core.AbstractPorts; import fr.ens.biologie.genomique.eoulsan.core.InputPort; import fr.ens.biologie.genomique.eoulsan.core.InputPorts; /** * This class define a group of Workflow input ports. * @since 2.0 * @author Laurent Jourdren */ class StepInputPorts extends AbstractPorts<StepInputPort> implements Serializable { private static final long serialVersionUID = -746211786359434112L; // // Static methods // static StepInputPorts noInputPort() { final Set<StepInputPort> ports = Collections.emptySet(); return new StepInputPorts(ports); } /** * Convert an OutputPorts object to a set of WorkflowOutputPort * @param step step related to the WorkflowOutputPort objects * @param ports ports to convert * @return a new set */ private static Set<StepInputPort> convert(final AbstractStep step, final InputPorts ports) { if (ports == null) { throw new NullPointerException("Ports is null"); } final boolean hadoopMode = EoulsanRuntime.getRuntime().getMode().isHadoopMode() && step.getEoulsanMode().isHadoopCompatible(); final Set<StepInputPort> result = new HashSet<>(); for (InputPort port : ports) { if (port != null) { result.add(new StepInputPort(step, port.getName(), port.isList(), port.getFormat(), port.getCompressionsAccepted(), hadoopMode ? true : port.isRequiredInWorkingDirectory())); } } return result; } // // Constructor. // /** * Constructor. * @param ports ports to add. */ StepInputPorts(final Set<StepInputPort> ports) { super(ports); } /** * Constructor. * @param step step related to the WorkflowOutputPort objects * @param ports port to convert */ StepInputPorts(final AbstractStep step, final InputPorts ports) { super(convert(step, ports)); } }