/*
* Eoulsan development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public License version 2.1 or
* later and CeCILL-C. This should be distributed with the code.
* If you do not have a copy, see:
*
* http://www.gnu.org/licenses/lgpl-2.1.txt
* http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt
*
* Copyright for this code is held jointly by the Genomic platform
* of the Institut de Biologie de l'École normale supérieure and
* the individual authors. These should be listed in @author doc
* comments.
*
* For more information on the Eoulsan project and its aims,
* or to join the Eoulsan Google group, visit the home page
* at:
*
* http://outils.genomique.biologie.ens.fr/eoulsan
*
*/
package fr.ens.biologie.genomique.eoulsan.bio.expressioncounters;
/**
* This enum defines the strand usage for the Expression Counter.
* @since 1.2
* @author Laurent Jourdren
*/
public enum StrandUsage {
YES("yes", true), NO("no", false), REVERSE("reverse", true);
private final String name;
private final boolean saveStrandInfo;
//
// Getters
//
/**
* Get the name of strand usage
* @return a string with the name of the strand usage
*/
public String getName() {
return this.name;
}
/**
* Test if strand information must be saved
* @return true if strand information must be saved
*/
public boolean isSaveStrandInfo() {
return this.saveStrandInfo;
}
//
// Static methods
//
/**
* Get the StrandUsage from its name.
* @param name name of the strand usage
* @return a StrandUsage or null if no StrandUsage found for the name
*/
public static StrandUsage getStrandUsageFromName(final String name) {
if (name == null) {
return null;
}
final String lowerName = name.trim().toLowerCase();
for (StrandUsage su : StrandUsage.values()) {
if (su.getName().toLowerCase().equals(lowerName)) {
return su;
}
}
return null;
}
//
// Constructor
//
/**
* Constructor.
* @param name name of the strand usage
* @param saveStrandInfo true if strand information must be saved
*/
StrandUsage(final String name, final boolean saveStrandInfo) {
this.name = name;
this.saveStrandInfo = saveStrandInfo;
}
}