/* * Eoulsan development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public License version 2.1 or * later and CeCILL-C. This should be distributed with the code. * If you do not have a copy, see: * * http://www.gnu.org/licenses/lgpl-2.1.txt * http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt * * Copyright for this code is held jointly by the Genomic platform * of the Institut de Biologie de l'École normale supérieure and * the individual authors. These should be listed in @author doc * comments. * * For more information on the Eoulsan project and its aims, * or to join the Eoulsan Google group, visit the home page * at: * * http://outils.genomique.biologie.ens.fr/eoulsan * */ package fr.ens.biologie.genomique.eoulsan.bio.expressioncounters; /** * This enum defines the strand usage for the Expression Counter. * @since 1.2 * @author Laurent Jourdren */ public enum StrandUsage { YES("yes", true), NO("no", false), REVERSE("reverse", true); private final String name; private final boolean saveStrandInfo; // // Getters // /** * Get the name of strand usage * @return a string with the name of the strand usage */ public String getName() { return this.name; } /** * Test if strand information must be saved * @return true if strand information must be saved */ public boolean isSaveStrandInfo() { return this.saveStrandInfo; } // // Static methods // /** * Get the StrandUsage from its name. * @param name name of the strand usage * @return a StrandUsage or null if no StrandUsage found for the name */ public static StrandUsage getStrandUsageFromName(final String name) { if (name == null) { return null; } final String lowerName = name.trim().toLowerCase(); for (StrandUsage su : StrandUsage.values()) { if (su.getName().toLowerCase().equals(lowerName)) { return su; } } return null; } // // Constructor // /** * Constructor. * @param name name of the strand usage * @param saveStrandInfo true if strand information must be saved */ StrandUsage(final String name, final boolean saveStrandInfo) { this.name = name; this.saveStrandInfo = saveStrandInfo; } }