/*
* Eoulsan development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public License version 2.1 or
* later and CeCILL-C. This should be distributed with the code.
* If you do not have a copy, see:
*
* http://www.gnu.org/licenses/lgpl-2.1.txt
* http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt
*
* Copyright for this code is held jointly by the Genomic platform
* of the Institut de Biologie de l'École normale supérieure and
* the individual authors. These should be listed in @author doc
* comments.
*
* For more information on the Eoulsan project and its aims,
* or to join the Eoulsan Google group, visit the home page
* at:
*
* http://outils.genomique.biologie.ens.fr/eoulsan
*
*/
package fr.ens.biologie.genomique.eoulsan.bio.io;
import java.nio.charset.Charset;
/**
* This class define encoding and charsets for bio file formats.
* @author Laurent Jourdren
* @since 2.0
*/
public class BioCharsets {
/** FASTA encoding. */
public static final String FASTA_ENCODING = "ISO-8859-1";
/** FASTQ Charset. */
public static final Charset FASTA_CHARSET = Charset.forName(FASTA_ENCODING);
/** FASTQ encoding. */
public static final String FASTQ_ENCODING = "ISO-8859-1";
/** FASTQ Charset. */
public static final Charset FASTQ_CHARSET = Charset.forName(FASTQ_ENCODING);
/** SAM encoding. */
public static final String SAM_ENCODING = "ISO-8859-1";
/** SAM Charset. */
public static final Charset SAM_CHARSET = Charset.forName(SAM_ENCODING);
/** GFF encoding. */
public static final String GFF_ENCODING = "ISO-8859-1";
/** GFF Charset. */
public static final Charset GFF_CHARSET = Charset.forName(SAM_ENCODING);
/** Expression files encoding. */
public static final String EXPRESSION_ENCODING = "UTF-8";
/** Expression files Charset. */
public static final Charset EXPRESSION_CHARSET =
Charset.forName(EXPRESSION_ENCODING);
//
// Constructor
//
/**
* Private constructor.
*/
private BioCharsets() {
}
}