/*
* Eoulsan development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public License version 2.1 or
* later and CeCILL-C. This should be distributed with the code.
* If you do not have a copy, see:
*
* http://www.gnu.org/licenses/lgpl-2.1.txt
* http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt
*
* Copyright for this code is held jointly by the Genomic platform
* of the Institut de Biologie de l'École normale supérieure and
* the individual authors. These should be listed in @author doc
* comments.
*
* For more information on the Eoulsan project and its aims,
* or to join the Eoulsan Google group, visit the home page
* at:
*
* http://outils.genomique.biologie.ens.fr/eoulsan
*
*/
package fr.ens.biologie.genomique.eoulsan.translators.io;
import java.io.BufferedWriter;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import fr.ens.biologie.genomique.eoulsan.Globals;
/**
* This class define a TranslatorOutputFormat that generate a tabular text file.
* @since 2.0
* @author Laurent Jourdren
*/
public class TSVTranslatorOutputFormat implements TranslatorOutputFormat {
private final BufferedWriter writer;
private boolean startOfLine = true;
@Override
public void addHeaderField(final String fieldName) throws IOException {
if (this.startOfLine) {
this.startOfLine = false;
} else {
this.writer.write('\t');
}
this.writer.write(fieldName);
}
@Override
public void newLine() throws IOException {
this.writer.write('\n');
this.startOfLine = true;
}
@Override
public void writeEmpty() throws IOException {
if (this.startOfLine) {
this.startOfLine = false;
} else {
this.writer.write('\t');
}
}
@Override
public void writeLong(final long l) throws IOException {
if (this.startOfLine) {
this.startOfLine = false;
} else {
this.writer.write('\t');
}
this.writer.write(Long.toString(l));
}
@Override
public void writeDouble(final double d) throws IOException {
if (this.startOfLine) {
this.startOfLine = false;
} else {
this.writer.write('\t');
}
this.writer.write(Double.toString(d));
}
@Override
public void writeText(final String text) throws IOException {
if (this.startOfLine) {
this.startOfLine = false;
} else {
this.writer.write('\t');
}
if (text != null) {
this.writer.write(text);
}
}
@Override
public void writeLink(final String text, final String link)
throws IOException {
writeText(text);
}
@Override
public void close() throws IOException {
this.writer.close();
}
//
// Constructor
//
/**
* Public constructor.
* @param os output stream
*/
public TSVTranslatorOutputFormat(final OutputStream os) {
this.writer =
new BufferedWriter(new OutputStreamWriter(os, Globals.DEFAULT_CHARSET));
}
/**
* Public constructor.
* @param file output file
*/
public TSVTranslatorOutputFormat(final File file) throws IOException {
this.writer =
new BufferedWriter(new OutputStreamWriter(new FileOutputStream(file),
Globals.DEFAULT_CHARSET));
}
}