/******************************************************************************* * Copyright (c) 2010 Haifeng Li * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. *******************************************************************************/ package smile.neighbor; import smile.data.AttributeDataset; import smile.data.NominalAttribute; import smile.data.parser.DelimitedTextParser; import java.util.ArrayList; import java.util.List; import org.junit.After; import org.junit.AfterClass; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import smile.math.distance.EuclideanDistance; /** * * @author Haifeng Li */ public class CoverTreeSpeedTest { double[][] x = null; double[][] testx = null; CoverTree<double[]> coverTree = null; public CoverTreeSpeedTest() { long start = System.currentTimeMillis(); DelimitedTextParser parser = new DelimitedTextParser(); parser.setResponseIndex(new NominalAttribute("class"), 0); try { AttributeDataset train = parser.parse("USPS Train", smile.data.parser.IOUtils.getTestDataFile("usps/zip.train")); AttributeDataset test = parser.parse("USPS Test", smile.data.parser.IOUtils.getTestDataFile("usps/zip.test")); x = train.toArray(new double[train.size()][]); testx = test.toArray(new double[test.size()][]); } catch (Exception ex) { System.err.println(ex); } double time = (System.currentTimeMillis() - start) / 1000.0; System.out.format("Loading data: %.2fs%n", time); start = System.currentTimeMillis(); coverTree = new CoverTree<>(x, new EuclideanDistance()); time = (System.currentTimeMillis() - start) / 1000.0; System.out.format("Building cover tree: %.2fs%n", time); } @BeforeClass public static void setUpClass() throws Exception { } @AfterClass public static void tearDownClass() throws Exception { } @Before public void setUp() { } @After public void tearDown() { } /** * Test of nearest method, of class CoverTree. */ @Test public void testCoverTree() { long start = System.currentTimeMillis(); for (int i = 0; i < testx.length; i++) { coverTree.nearest(testx[i]); } double time = (System.currentTimeMillis() - start) / 1000.0; System.out.format("NN: %.2fs%n", time); start = System.currentTimeMillis(); for (int i = 0; i < testx.length; i++) { coverTree.knn(testx[i], 10); } time = (System.currentTimeMillis() - start) / 1000.0; System.out.format("10-NN: %.2fs%n", time); start = System.currentTimeMillis(); List<Neighbor<double[], double[]>> n = new ArrayList<>(); for (int i = 0; i < testx.length; i++) { coverTree.range(testx[i], 8.0, n); n.clear(); } time = (System.currentTimeMillis() - start) / 1000.0; System.out.format("Range: %.2fs%n", time); } }