/*
* MarkovRewardCoreTest.java
*
* Copyright (c) 2002-2014 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package test.dr.math;
import dr.inference.markovjumps.SericolaSeriesMarkovReward;
/**
* Created by msuchard on 4/19/14.
*/
public class MarkovRewardCoreTest extends MathTestCase {
private double[] Q3 = new double[]{
-1, 1, 0,
0.5, -1, 0.5,
0, 1, -1
};
private double[] a3 = new double[]{0, 1, 2};
// public void testMarkovCore3() {
// SericolaSeriesMarkovReward core = new SericolaSeriesMarkovReward(Q3, a3, 3);
// double[] W1 = core.computeCdf(1.0 - 1E-12, 1.0);
// double[] P1 = core.computePdf(1.0 - 1E-12, 1.0);
//
// double[] W2 = core.computeCdf(2.0 - 1E-12, 1.0);
// double[] W3 = core.computeCdf(100 - 1E-12, 100);
// }
private double[] Q2 = new double[]{-3.1, 3.1, 1.1, -1.1};
private double[] a2 = new double[]{0.0, 1.0};
public void testMarkovCore2() {
SericolaSeriesMarkovReward core = new SericolaSeriesMarkovReward(Q2, a2, 2);
// double[] W1 = core.computeCdf(1.0 - 1E-12, 1.0);
// double[] P1 = core.computePdf(1.0 - 1E-12, 1.0);
for (double x = 0.1; x < 4.0; x += 0.1) {
double[] P = core.computePdf(x, 4.0);
System.err.println(x + ", " + P[3]);
}
// double[] W3 = core.computeCdf(10 - 1E-12, 10);
}
}