/*
* FullyConjugateTreeTipsPotentialDerivativeParser.java
*
* Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodelxml.continuous.hmc;
import dr.evomodel.continuous.FullyConjugateMultivariateTraitLikelihood;
import dr.evomodel.continuous.hmc.FullyConjugateTreeTipsPotentialDerivative;
import dr.xml.*;
/**
* @author Max Tolkoff
*/
public class FullyConjugateTreeTipsPotentialDerivativeParser extends AbstractXMLObjectParser {
public final static String FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE = "fullyConjugateTreeTipsPotentialDerivative";
public final static String FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE2 = "traitGradientOnTree";
@Override
public String getParserName() {
return FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE;
}
@Override
public String[] getParserNames() {
return new String[] { FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE, FULLY_CONJUGATE_TREE_TIPS_POTENTIAL_DERIVATIVE2 };
}
@Override
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
FullyConjugateMultivariateTraitLikelihood treeLikelihood = (FullyConjugateMultivariateTraitLikelihood) xo.getChild(FullyConjugateMultivariateTraitLikelihood.class);
return new FullyConjugateTreeTipsPotentialDerivative(treeLikelihood);
}
@Override
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
new ElementRule(FullyConjugateMultivariateTraitLikelihood.class),
};
@Override
public String getParserDescription() {
return null;
}
@Override
public Class getReturnType() {
return FullyConjugateTreeTipsPotentialDerivative.class;
}
}