/* * WanderingTaxonLoggerParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml; import dr.xml.*; import dr.evomodel.tree.WanderingTaxonLogger; import dr.evolution.util.Taxon; /** * @author Marc A. Suchard */ public class WanderingTaxonLoggerParser extends AbstractXMLObjectParser { public static final String NAME = "name"; public Object parseXMLObject(XMLObject xo) throws XMLParseException { String name = xo.getAttribute(NAME, xo.getId()); WanderingTaxonLogger.Relative relative = WanderingTaxonLogger.Relative.SISTER; if (xo.getAttribute(WanderingTaxonLogger.RELATIVE,"sister").equalsIgnoreCase("parent")) { relative = WanderingTaxonLogger.Relative.PARENT; } Taxon taxon = (Taxon) xo.getChild(Taxon.class); return new WanderingTaxonLogger(name,taxon,relative); } public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[] { AttributeRule.newStringRule(NAME,true), AttributeRule.newStringRule(WanderingTaxonLogger.RELATIVE,true), new ElementRule(Taxon.class), }; } public String getParserDescription() { return null; } public Class getReturnType() { return WanderingTaxonLogger.class; } public String getParserName() { return WanderingTaxonLogger.WANDERER; } }