/* * BranchSpecificTraitParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodel.branchmodel.lineagespecific; import dr.evomodel.branchmodel.BranchModel; import dr.evomodel.tree.TreeModel; import dr.xml.AbstractXMLObjectParser; import dr.xml.ElementRule; import dr.xml.XMLObject; import dr.xml.XMLParseException; import dr.xml.XMLSyntaxRule; /** * @author Filip Bielejec * @version $Id$ * */ public class BranchSpecificTraitParser extends AbstractXMLObjectParser { public static final String BRANCH_SPECIFIC_TRAIT = "branchSpecificTrait"; @Override public String getParserName() { return BRANCH_SPECIFIC_TRAIT; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { BranchModel branchModel = (BranchModel) xo.getChild(BranchModel.class); // CompoundParameter parameter = (CompoundParameter) xo.getChild(CompoundParameter.class); TreeModel treeModel = (TreeModel) xo.getChild(TreeModel.class); return new BranchSpecificTrait(treeModel, branchModel, xo.getId()); } @Override public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[] { new ElementRule(BranchModel.class, false), // new ElementRule(TreeModel.class, false), // }; } @Override public String getParserDescription() { return BRANCH_SPECIFIC_TRAIT; } @Override public Class getReturnType() { return BranchSpecificTrait.class; } }// END: class