MarkovJumpsType.java

/*
 * MarkovJumpsType.java
 *
 * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
 *
 * This file is part of BEAST.
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership and licensing.
 *
 * BEAST is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 *  BEAST is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with BEAST; if not, write to the
 * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 * Boston, MA  02110-1301  USA
 */

package dr.inference.markovjumps;

/**
 * @author Marc Suchard
 * @author Vladimir Minin
 *         <p/>
 *         A base class for implementing Markov chain-induced counting processes (markovjumps) in BEAST using BEAGLE
 *         This work is supported by NSF grant 0856099
 *         <p/>
 *         Minin VN and Suchard MA (2008) Counting labeled transitions in continous-time Markov models of evolution.
 *         Journal of Mathematical Biology, 56, 391-412.
 */

public enum MarkovJumpsType {

    HISTORY("history"),
    COUNTS("counts"),
    REWARDS("rewards");

    MarkovJumpsType(String text) {
        this.text = text;
    }

    public String getText() {
        return text;
    }

    private final String text;

    public static MarkovJumpsType parseFromString(String text) {
        for (MarkovJumpsType scheme : MarkovJumpsType.values()) {
            if (scheme.getText().compareToIgnoreCase(text) == 0)
                return scheme;
        }
        return null;
    }
}