/*
* StratifiedTraitOutputFormat.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.substmodel;
/**
* @author Marc A. Suchard
* @author Vladimir Minin
* <p/>
* A class for enumerating different robust counting output formats in BEAST using BEAGLE
* This work is supported by NSF grant 0856099
*/
public enum StratifiedTraitOutputFormat {
SUM_OVER_SITES("sumOverAllSites", false),
SUM_OVER_SITES_WITH_CONDITIONED("sumOverAllSitesWithUnconditioned", true),
PER_SITE("perSite", false),
PER_SITE_WITH_UNCONDITIONED("perSiteWithUnconditioned", true),
ARBITRARY_SITES("arbitrarySites", false),
ARBITRARY_SITES_WITH_UNCONDITIONED("arbitrarySitesWithUnconditioned", true);
private StratifiedTraitOutputFormat(String text, boolean supportsUnconditioned) {
this.text = text;
this.supportsUnconditioned = supportsUnconditioned;
}
public String getText() {
return text;
}
public boolean getSupportsUnconditioned() {
return supportsUnconditioned;
}
public static StratifiedTraitOutputFormat parseFromString(String text) {
for (StratifiedTraitOutputFormat format : StratifiedTraitOutputFormat.values()) {
if (format.getText().compareToIgnoreCase(text) == 0)
return format;
}
return null;
}
private final String text;
private final boolean supportsUnconditioned;
}