package dr.inferencexml.model;
import dr.inference.model.AdaptableSizeFastMatrixParameter;
import dr.xml.*;
/**
* Created by max on 4/6/16.
*/
public class AdaptableSizeFastMatrixParameterParser extends AbstractXMLObjectParser {
private static final String ADAPTABLE_SIZE_FAST_MATRIX_PARAMETER="adaptableSizeFastMatrixParameter";
private static final String ROWS="rows";
private static final String MAX_ROW_SIZE="maxRowSize";
private static final String MAX_COL_SIZE="maxColumnSize";
private static final String COLUMNS="columns";
private static final String TRANSPOSE="transpose";
private static final String STARTING_VALUE = "startingValue";
private static final String LOWER_TRIANGLE = "lowerTriangle";
@Override
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
int MaxRowSize = xo.getAttribute(MAX_ROW_SIZE, 1);
int MaxColumnSize = xo.getAttribute(MAX_COL_SIZE, 1);
int rowDimension = xo.getAttribute(ROWS, 1);
int columnDimension = xo.getAttribute(COLUMNS, 1);
String name = xo.getName();
double startingValue = 1;
if(xo.hasAttribute(STARTING_VALUE))
startingValue = xo.getDoubleAttribute(STARTING_VALUE);
boolean lowerTriangle = false;
if(xo.hasAttribute(LOWER_TRIANGLE))
lowerTriangle = xo.getBooleanAttribute(LOWER_TRIANGLE);
return new AdaptableSizeFastMatrixParameter(name, rowDimension, columnDimension, MaxRowSize, MaxColumnSize, startingValue, lowerTriangle);
}
@Override
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
// new ElementRule(Parameter.class, 0, Integer.MAX_VALUE),
AttributeRule.newIntegerRule(COLUMNS, true),
AttributeRule.newIntegerRule(ROWS, true),
AttributeRule.newIntegerRule(MAX_ROW_SIZE, true),
AttributeRule.newIntegerRule(MAX_COL_SIZE, true),
AttributeRule.newDoubleRule(STARTING_VALUE, true),
AttributeRule.newBooleanRule(LOWER_TRIANGLE, true),
};
@Override
public String getParserDescription() {
return "Returns a blockUpperTriangularMatrixParameter which is a compoundParameter which forces the last element to be of full length, the second to last element to be of full length-1, etc."; //To change body of implemented methods use File | Settings | File Templates.
}
@Override
public Class getReturnType() {
return AdaptableSizeFastMatrixParameter.class; //To change body of implemented methods use File | Settings | File Templates.
}
@Override
public String getParserName() {
return ADAPTABLE_SIZE_FAST_MATRIX_PARAMETER; //To change body of implemented methods use File | Settings | File Templates.
}
}