/*
* SiteLogLikelihoodLoggerParser.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.app.beagle.tools.parsers;
import dr.evomodel.treelikelihood.BeagleTreeLikelihood;
import dr.app.beagle.tools.SiteLogLikelihoodLogger;
import dr.xml.AbstractXMLObjectParser;
import dr.xml.ElementRule;
import dr.xml.XMLObject;
import dr.xml.XMLParseException;
import dr.xml.XMLSyntaxRule;
public class SiteLogLikelihoodLoggerParser extends AbstractXMLObjectParser {
public static final String SITE_LOGLIKELIHOOD_LOGGER = "siteLogLikelihood";
@Override
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
SiteLogLikelihoodLogger siteLogLikelihoodLogger;
BeagleTreeLikelihood beagleTreeLikelihood = null;
for (int i = 0; i < xo.getChildCount(); i++) {
beagleTreeLikelihood = (BeagleTreeLikelihood) xo.getChild(i);
}
siteLogLikelihoodLogger = new SiteLogLikelihoodLogger(
beagleTreeLikelihood);
return siteLogLikelihoodLogger;
}// END: parseXMLObject
@Override
public XMLSyntaxRule[] getSyntaxRules() {
return new XMLSyntaxRule[] { new ElementRule(BeagleTreeLikelihood.class) };
}// END: getSyntaxRules
@Override
public String getParserName() {
return SITE_LOGLIKELIHOOD_LOGGER;
}// END: getParserName
@Override
public String getParserDescription() {
return "Beagle site logLikelihood";
}// END: getParserDescription
@Override
public Class<SiteLogLikelihoodLogger> getReturnType() {
return SiteLogLikelihoodLogger.class;
}// getReturnType
}// END: class