/* * BoundsCheckedFunction.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.math; /** * returns a very large number instead of the function value * if arguments are out of bound (useful for minimization with * minimizers that don't check argument boundaries) * * @author Korbinian Strimmer */ public class BoundsCheckedFunction implements MultivariateFunction { /** * construct bound-checked multivariate function * (a large number will be returned on function evaluation if argument * is out of bounds; default is 1000000) * * @param func unconstrained multivariate function */ public BoundsCheckedFunction(MultivariateFunction func) { this(func, 1000000); } /** * construct constrained multivariate function * * @param func unconstrained multivariate function * @param largeNumber value returned on function evaluation * if argument is out of bounds */ public BoundsCheckedFunction(MultivariateFunction func, double largeNumber) { f = func; veryLarge = largeNumber; } /** * computes function value, taking into account the constraints on the * argument * * @param x function argument * @return function value (if argument is not in the predefined constrained area * a very large number is returned instead of the true function value) */ public double evaluate(double[] x) { int len = f.getNumArguments(); for (int i = 0; i < len; i++) { if (x[i] < f.getLowerBound(i) || x[i] > f.getUpperBound(i)) { return veryLarge; } } return f.evaluate(x); } public int getNumArguments() { return f.getNumArguments(); } public double getLowerBound(int n) { return f.getLowerBound(n); } public double getUpperBound(int n) { return f.getUpperBound(n); } // // Private stuff // private MultivariateFunction f; private double veryLarge; }