/*
* CoalescentIntervalStatistic.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.evomodel.coalescent;
import dr.inference.model.Statistic;
import dr.math.Binomial;
public class CoalescentIntervalStatistic extends Statistic.Abstract {
private final CoalescentIntervalProvider coalescent;
private final boolean rescaleToNe;
public CoalescentIntervalStatistic(CoalescentIntervalProvider coalescent) {
this(coalescent, false);
}
public CoalescentIntervalStatistic(CoalescentIntervalProvider coalescent, boolean rescaleToNe) {
this.coalescent = coalescent;
this.rescaleToNe = rescaleToNe;
}
public int getDimension() {
throw new RuntimeException("the use of CoalescentIntervalStatistic has been deprecated");
//return coalescent.getCoalescentIntervalDimension();
}
public double getStatisticValue(int i) {
throw new RuntimeException("the use of CoalescentIntervalStatistic has been deprecated");
/*double interval = coalescent.getCoalescentInterval(i);
if (rescaleToNe) {
int lineages = coalescent.getCoalescentIntervalLineageCount(i);
interval *= Binomial.choose2(lineages);
// TODO Double-check; maybe need to return 1/interval or divide by choose2(lineages)
}*/
//return interval;
}
public String getStatisticName() {
return "coalescentIntervalStatistic";
}
}