/* * GradientWrapperParser.java * * Copyright (c) 2002-2017 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.inferencexml.hmc; import dr.inference.distribution.DistributionLikelihood; import dr.inference.distribution.MultivariateDistributionLikelihood; import dr.inference.model.GradientProvider; import dr.inference.hmc.GradientWrtParameterProvider; import dr.inference.model.Parameter; import dr.xml.*; /** * Created by msuchard on 4/27/17. */ public class GradientWrapperParser extends AbstractXMLObjectParser { public static final String NAME = "gradient"; @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { Object obj = xo.getChild(0); if (obj instanceof MultivariateDistributionLikelihood) { final MultivariateDistributionLikelihood mdl = (MultivariateDistributionLikelihood) xo.getChild(MultivariateDistributionLikelihood.class); if (!(mdl.getDistribution() instanceof GradientProvider)) { throw new XMLParseException("Not a gradient provider"); } final GradientProvider provider = (GradientProvider) mdl.getDistribution(); final Parameter parameter = mdl.getDataParameter(); return new GradientWrtParameterProvider.ParameterWrapper(provider, parameter, mdl); } else { DistributionLikelihood dl = (DistributionLikelihood) obj; if (!(dl.getDistribution() instanceof GradientProvider)) { throw new XMLParseException("Not a gradient provider"); } throw new RuntimeException("Not yet implemented"); } } @Override public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[] { new XORRule( new ElementRule(DistributionLikelihood.class), new ElementRule(MultivariateDistributionLikelihood.class) ) }; } @Override public String getParserDescription() { return null; } @Override public Class getReturnType() { return GradientWrtParameterProvider.class; } @Override public String getParserName() { return NAME; } }