/*
* DefaultModelParser.java
*
* Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inferencexml.model;
import dr.inference.model.DefaultModel;
import dr.inference.model.Parameter;
import dr.xml.AbstractXMLObjectParser;
import dr.xml.ElementRule;
import dr.xml.XMLObject;
import dr.xml.XMLSyntaxRule;
/**
*
*/
public class DefaultModelParser extends AbstractXMLObjectParser {
public static final String DUMMY_MODEL = "dummyModel";
public String getParserName() {
return DUMMY_MODEL;
}
public Object parseXMLObject(XMLObject xo) {
DefaultModel likelihood = new DefaultModel();
for (int i = 0; i < xo.getChildCount(); i++) {
Parameter parameter = (Parameter) xo.getChild(i);
likelihood.addVariable(parameter);
}
return likelihood;
}
//************************************************************************
// AbstractXMLObjectParser implementation
//************************************************************************
public String getParserDescription() {
return "A function wraps a component model that would otherwise not be registered with the MCMC. Always returns a log likelihood of zero.";
}
public Class getReturnType() {
return DefaultModel.class;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
new ElementRule(Parameter.class, 1, Integer.MAX_VALUE)
};
}