/* * BayesianSkylinePopSizeStatisticParser.java * * Copyright (c) 2002-2015 Alexei Drummond, Andrew Rambaut and Marc Suchard * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package dr.evomodelxml.coalescent; import dr.evomodel.coalescent.BayesianSkylineLikelihood; import dr.evomodel.coalescent.BayesianSkylinePopSizeStatistic; import dr.xml.AbstractXMLObjectParser; import dr.xml.XMLObject; import dr.xml.XMLParseException; import dr.xml.XMLSyntaxRule; /** */ public class BayesianSkylinePopSizeStatisticParser extends AbstractXMLObjectParser { public static final String TIME = "time"; public static final String BAYESIAN_SKYLINE_POP_SIZE_STATISTIC = "generalizedSkylinePopSizeStatistic"; public String getParserDescription() { return "The pop sizes at the given times"; } public Class getReturnType() { return BayesianSkylinePopSizeStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return null; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { double time = xo.getDoubleAttribute(TIME); BayesianSkylineLikelihood bsl = (BayesianSkylineLikelihood) xo.getChild(BayesianSkylineLikelihood.class); return new BayesianSkylinePopSizeStatistic(time, bsl); } public String getParserName() { return BAYESIAN_SKYLINE_POP_SIZE_STATISTIC; } }