QtlFinderModel2.java

package plugins.qtlfinder2;

import java.util.HashMap;
import java.util.List;
import java.util.Map;

import org.molgenis.util.Entity;
import org.molgenis.xgap.Gene;

import plugins.qtlfinder.QTLInfo;
import plugins.qtlfinder.QTLMultiPlotResult;
import plugins.reportbuilder.Report;

public class QtlFinderModel2
{

	// the term you enter in the search box
	private String query;

	// listing of datatypes and the amount of records per type
	private Map<String, Integer> annotationTypeAndNr;
	private String selectedAnnotationTypeAndNr;

	// current hits to search term
	private Map<String, Entity> hits;

	// if the query string is too specific, we shorten it by 1 character at a
	// time until there is at least 1 match
	// in that case, we want to inform the user that the query string has been
	// shortened, and this is the one used
	String shortenedQuery;

	// names of things in the shoppingcart
	Map<String, Entity> shoppingCart = new HashMap<String, Entity>();

	// results for a multiplot request
	private QTLMultiPlotResult multiplot;

	// results for a single-entity report, overrules other results but does not
	// remove them
	private Report report;
	private List<QTLInfo> qtls;

	// if true, display contents of cart
	private Boolean cartView;

	// permanent link to a plotted shopping cart
	String permaLink;

	// additional infomation: what gene was a hit for this probe?
	Map<String, Gene> probeToGene;

	public Map<String, Gene> getProbeToGene()
	{
		return probeToGene;
	}

	public void setProbeToGene(Map<String, Gene> probeToGene)
	{
		this.probeToGene = probeToGene;
	}

	public String getPermaLink()
	{
		return permaLink;
	}

	public void setPermaLink(String permaLink)
	{
		this.permaLink = permaLink;
	}

	public Boolean getCartView()
	{
		return cartView;
	}

	public void setCartView(Boolean cartView)
	{
		this.cartView = cartView;
	}

	public List<QTLInfo> getQtls()
	{
		return qtls;
	}

	public void setQtls(List<QTLInfo> qtls)
	{
		this.qtls = qtls;
	}

	public String getQuery()
	{
		return query;
	}

	public void setQuery(String query)
	{
		this.query = query;
	}

	public Map<String, Integer> getAnnotationTypeAndNr()
	{
		return annotationTypeAndNr;
	}

	public void setAnnotationTypeAndNr(Map<String, Integer> annotationTypeAndNr)
	{
		this.annotationTypeAndNr = annotationTypeAndNr;
	}

	public String getSelectedAnnotationTypeAndNr()
	{
		return selectedAnnotationTypeAndNr;
	}

	public void setSelectedAnnotationTypeAndNr(String selectedAnnotationTypeAndNr)
	{
		this.selectedAnnotationTypeAndNr = selectedAnnotationTypeAndNr;
	}

	public Map<String, Entity> getHits()
	{
		return hits;
	}

	public void setHits(Map<String, Entity> hits)
	{
		this.hits = hits;
	}

	public String getShortenedQuery()
	{
		return shortenedQuery;
	}

	public void setShortenedQuery(String shortenedQuery)
	{
		this.shortenedQuery = shortenedQuery;
	}

	public Map<String, Entity> getShoppingCart()
	{
		return shoppingCart;
	}

	public void setShoppingCart(Map<String, Entity> shoppingCart)
	{
		this.shoppingCart = shoppingCart;
	}

	public QTLMultiPlotResult getMultiplot()
	{
		return multiplot;
	}

	public void setMultiplot(QTLMultiPlotResult multiplot)
	{
		this.multiplot = multiplot;
	}

	public Report getReport()
	{
		return report;
	}

	public void setReport(Report report)
	{
		this.report = report;
	}

}