FastaService.java

package org.molgenis.mutation.service;

import java.util.List;

import org.molgenis.framework.db.Database;
import org.molgenis.framework.db.DatabaseException;
//import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;

@Service
public class FastaService
{
	private Database db;
	private final int ROWSIZE = 60;

	// @Autowired
	public void setDatabase(Database db)
	{
		this.db = db;
	}

	public String exportGene() throws DatabaseException
	{
		// StringBuilder b = new StringBuilder();
		//
		// List<Gene> geneList = this.db.query(Gene.class).find();
		//
		// Gene gene = geneList.get(0);
		//
		// b.append(">" + gene.getName() + "\n");
		//
		// for (int i = 0; i < gene.getNuclSequence().length(); i += ROWSIZE)
		// {
		// int startPos = i;
		// int endPos = (i + ROWSIZE < gene.getNuclSequence().length() ? i +
		// ROWSIZE : gene.getNuclSequence().length());
		// b.append(gene.getNuclSequence().substring(startPos, endPos) + "\n");
		// }
		//
		// return b.toString();
		return "";
	}
}