MutationUploadDTO.java

package org.molgenis.mutation.dto;

import java.io.Serializable;

public class MutationUploadDTO implements Serializable
{
	/* The serial version UID of this class. Needed for serialization. */
	private static final long serialVersionUID = 1070160510535611854L;

	private String aaNotation;
	private Integer aaStart;
	private Integer aaEnd;
	private String cdnaNotation;
	private Integer cdnaStart;
	private Integer cdnaEnd;
	private String codonChange;
	private String consequence;
	private Boolean effectOnSplicing;
	private String event;
	private String gdnaNotation;
	private Integer gdnaStart;
	private Integer gdnaEnd;
	private String identifier;
	private Integer length;
	private String mutationPosition;
	private String ntChange;
	private String type;
	private Integer exonId;
	private Boolean exonIsIntron;

	// Values that are calculated but not stored in the db
	private String nt;
	private String aa;
	private String aachange;

	public MutationUploadDTO()
	{
	}

	public String getAaNotation()
	{
		return aaNotation;
	}

	public void setAaNotation(String aaNotation)
	{
		this.aaNotation = aaNotation;
	}

	public Integer getAaStart()
	{
		return aaStart;
	}

	public void setAaStart(Integer aaStart)
	{
		this.aaStart = aaStart;
	}

	public Integer getAaEnd()
	{
		return aaEnd;
	}

	public void setAaEnd(Integer aaEnd)
	{
		this.aaEnd = aaEnd;
	}

	public String getCdnaNotation()
	{
		return cdnaNotation;
	}

	public void setCdnaNotation(String cdnaNotation)
	{
		this.cdnaNotation = cdnaNotation;
	}

	public Integer getCdnaStart()
	{
		return cdnaStart;
	}

	public void setCdnaStart(Integer cdnaStart)
	{
		this.cdnaStart = cdnaStart;
	}

	public Integer getCdnaEnd()
	{
		return cdnaEnd;
	}

	public void setCdnaEnd(Integer cdnaEnd)
	{
		this.cdnaEnd = cdnaEnd;
	}

	public Integer getGdnaStart()
	{
		return gdnaStart;
	}

	public void setGdnaStart(Integer gdnaStart)
	{
		this.gdnaStart = gdnaStart;
	}

	public Integer getGdnaEnd()
	{
		return gdnaEnd;
	}

	public void setGdnaEnd(Integer gdnaEnd)
	{
		this.gdnaEnd = gdnaEnd;
	}

	public String getCodonChange()
	{
		return codonChange;
	}

	public void setCodonChange(String codonChange)
	{
		this.codonChange = codonChange;
	}

	public String getConsequence()
	{
		return consequence;
	}

	public void setConsequence(String consequence)
	{
		this.consequence = consequence;
	}

	public Boolean getEffectOnSplicing()
	{
		return effectOnSplicing;
	}

	public void setEffectOnSplicing(Boolean effectOnSplicing)
	{
		this.effectOnSplicing = effectOnSplicing;
	}

	public String getIdentifier()
	{
		return identifier;
	}

	public void setIdentifier(String identifier)
	{
		this.identifier = identifier;
	}

	public String getEvent()
	{
		return event;
	}

	public void setEvent(String event)
	{
		this.event = event;
	}

	public String getGdnaNotation()
	{
		return gdnaNotation;
	}

	public void setGdnaNotation(String gdnaNotation)
	{
		this.gdnaNotation = gdnaNotation;
	}

	public Integer getLength()
	{
		return length;
	}

	public void setLength(Integer length)
	{
		this.length = length;
	}

	public String getMutationPosition()
	{
		return mutationPosition;
	}

	public void setMutationPosition(String mutationPosition)
	{
		this.mutationPosition = mutationPosition;
	}

	public String getNtChange()
	{
		return ntChange;
	}

	public void setNtChange(String ntChange)
	{
		this.ntChange = ntChange;
	}

	public String getType()
	{
		return type;
	}

	public void setType(String type)
	{
		this.type = type;
	}

	public Integer getExonId()
	{
		return exonId;
	}

	public void setExonId(Integer exonId)
	{
		this.exonId = exonId;
	}

	public Boolean getExonIsIntron()
	{
		return exonIsIntron;
	}

	public void setExonIsIntron(Boolean exonIsIntron)
	{
		this.exonIsIntron = exonIsIntron;
	}

	public String getNt()
	{
		return nt;
	}

	public void setNt(String nt)
	{
		this.nt = nt;
	}

	public String getAa()
	{
		return aa;
	}

	public void setAa(String aa)
	{
		this.aa = aa;
	}

	public String getAachange()
	{
		return aachange;
	}

	public void setAachange(String aachange)
	{
		this.aachange = aachange;
	}

	// public String toString()
	// {
	// return
	// "Gene: " + this.getGeneSymbol() + "\n" +
	// "Position: " + this.getMutation().getMutationPosition() + "\n" +
	// "Nucleotide: " + this.getNt() + "\n" +
	// "Event: " + this.getMutation().getEvent() + "\n" +
	// "Conserved AA: " + this.getMutation().getConservedAA() + "\n" +
	// "Splicing: " + this.getMutation().getEffectOnSplicing() + "\n" +
	// "Founder mut: " + this.getMutation().getFounderMutation() + "\n" +
	// "Population: " + this.getMutation().getPopulation() + "\n" +
	// "SNP?: " + this.getMutation().getReportedSNP() + "\n" +
	// "Inheritance: " + this.getMutation().getInheritance() + "\n" +
	// "NT change: " + this.getMutation().getNtchange() + "\n" +
	// "Codon: " + this.getCodon() + "\n" +
	// "cDNA not: " + this.getMutation().getCdna_Notation() + "\n" +
	// "gDNA not: " + this.getMutation().getGdna_Notation() + "\n" +
	// "AA not: " + this.getMutation().getAa_Notation() + "\n" +
	// "Consequence: " + this.getMutation().getConsequence() + "\n" +
	// "Type: " + this.getMutation().getType() + "\n";
	// }
}