CohortsPluginModel.java

/* Date:        May 24, 2011
 * Template:	EasyPluginModelGen.java.ftl
 * generator:   org.molgenis.generators.ui.EasyPluginModelGen 4.0.0-testing
 * 
 * THIS FILE IS A TEMPLATE. PLEASE EDIT :-)
 */

package plugins.listplugin;

import java.text.ParseException;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;

import org.molgenis.bbmri.Biobank;
import org.molgenis.framework.db.Database;
import org.molgenis.framework.db.DatabaseException;
import org.molgenis.framework.db.Query;
import org.molgenis.framework.ui.EasyPluginModel;

/**
 * CohortsPluginModel takes care of all state and it can have helper methods to
 * query the database. It should not contain layout or application logic which
 * are solved in View and Controller.
 * 
 * @See org.molgenis.framework.ui.ScreenController for available services.
 */
public class CohortsPluginModel extends EasyPluginModel
{
	// a system veriable that is needed by tomcat
	private static final long serialVersionUID = 1L;

	private List<Biobank> cohorts;

	// another example, you can also use getInvestigations() and
	// setInvestigations(...)
	// public List<Investigation> investigations = new
	// ArrayList<Investigation>();

	public CohortsPluginModel(CohortsPlugin controller)
	{
		// each Model can access the controller to notify it when needed.
		super(controller);
	}

	public void setCohorts(List<Biobank> cohorts)
	{
		this.cohorts = cohorts;
	}

	public List<Biobank> getCohorts()
	{
		return cohorts;
	}

	public java.util.List<Biobank> removeEmptyValues(Database db)
	{

		java.util.List<Biobank> Biobank = new ArrayList<Biobank>();
		Iterator<Biobank> iterator = Biobank.iterator();

		Query<Biobank> q = db.query(Biobank.class);
		try
		{
			Biobank = q.find();
			while (iterator.hasNext())
			{
				if (iterator.next().getGwaDataNum().isEmpty())
				{
					iterator.next().setGwaDataNum("not available");
				}

			}
		}
		catch (DatabaseException e)
		{
			e.printStackTrace();
		}

		return Biobank;

	}

	// @Override
	// public boolean isVisible() {
	// try {
	// return
	// this.getController().getApplicationController().getLogin().canRead(this.getController());
	// } catch (DatabaseException e) {
	// e.printStackTrace();
	// return false;
	// }
	// }

}