TableField.java

package plugins.biobankimporter;

import java.util.ArrayList;
import java.util.List;

import org.molgenis.organization.InvestigationElement;
import org.molgenis.pheno.Category;
import org.molgenis.pheno.Measurement;
import org.molgenis.pheno.ObservedValue;
import org.molgenis.pheno.Panel;
import org.molgenis.protocol.Protocol;
import org.molgenis.util.SimpleTuple;
import org.molgenis.util.Tuple;

public class TableField
{

	// Prediction prediction = null;

	public static boolean COLVALUE = true;

	public static boolean COLHEADER = false;

	// e.g. 'Protocol'
	private String classType = "";
	// e.g. 'name'
	private String fieldName = "";

	private String multipleValues = "";

	private int columnIndex;

	private int[] dependentColumnIndex;

	private Boolean vertical;

	private Protocol protocol = null;

	private ObservedValue observedValue = null;

	private Measurement measurement = null;

	private Panel panel = null;

	private Category category = null;

	private TableField Target = null;

	private TableField Feature = null;

	private Tuple defaults = new SimpleTuple();

	private int observationTarget = -1;

	private List<InvestigationElement> entity = null;

	private String relationString = null;

	private List<String> cellValues = new ArrayList<String>();

	public List<InvestigationElement> getEntity()
	{
		return entity;
	}

	public void setEntity(List<InvestigationElement> entity)
	{
		this.entity = entity;
	}

	public TableField(String ClassType, String fieldName, String multipleValues, int columnIndex, Boolean Vertical,
			Tuple defaults, int... dependentColumnIndex)
	{

		this.fieldName = fieldName;
		this.classType = ClassType;
		this.columnIndex = columnIndex;
		this.multipleValues = multipleValues;
		this.vertical = Vertical;
		this.defaults = defaults;
		this.dependentColumnIndex = dependentColumnIndex;
	}

	public Tuple getDefaults()
	{
		return defaults;
	}

	public void setDefaults(Tuple defaults)
	{
		this.defaults = defaults;
	}

	public int[] getDependentColumnIndex()
	{
		return dependentColumnIndex;
	}

	public void setDependentColumnIndex(int... dependentColumnIndex)
	{
		this.dependentColumnIndex = dependentColumnIndex;
	}

	public void initializeHashMap(String ClassType)
	{
	}

	public String getClassType()
	{
		return classType;
	}

	public Boolean getVertical()
	{
		return vertical;
	}

	public int getColumnIndex()
	{
		return columnIndex;
	}

	public void setRelation(TableField Target, TableField Feature)
	{
		this.Target = Target;
		this.Feature = Feature;
	}

	public TableField getTarget()
	{
		return Target;
	}

	public TableField getFeature()
	{
		return Feature;
	}

	public String getFieldName()
	{
		return fieldName;
	}

	public void setFieldName(String fieldName)
	{
		this.fieldName = fieldName;
	}

	public String getValueSplitter()
	{
		return "\\|";
	}

	public void setObservationTarget(int observationTarget)
	{
		this.observationTarget = observationTarget;
	}

	public int getObservationTarget()
	{
		return observationTarget;
	}

	public void setRelation(String fieldName)
	{

		this.relationString = fieldName;

	}

	public String getMultipleValues()
	{
		return multipleValues;
	}

	public String getRelationString()
	{
		return relationString;
	}

	public void setRelationString(String relationString)
	{
		this.relationString = relationString;
	}

	public List<String> getCellValue()
	{
		return cellValues;
	}

	public void addCellValue(String value)
	{
		cellValues.add(value);
	}
}