MutationSearchCriteriaDTO.java

package org.molgenis.mutation.dto;

import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;

import org.apache.commons.lang.StringUtils;

public class MutationSearchCriteriaDTO implements Serializable
{
	/* The serial version UID of this class. Needed for serialization. */
	private static final long serialVersionUID = -399485639945935744L;
	Integer cdnaPosition;
	Integer codonChangeNumber;
	Integer codonNumber;
	String consequence;
	Integer exonId;
	String exonName;
	Integer exonNumber;
	String mid;
	String inheritance;
	Integer mutationId;
	String pid;
	Integer phenotypeId;
	String phenotypeName;
	Integer proteinDomainId;
	String publication;
	Boolean reportedAsSNP;
	String searchTerm;
	String type;
	String variation;

	public Integer getCdnaPosition()
	{
		return cdnaPosition;
	}

	public void setCdnaPosition(Integer cdnaPosition)
	{
		this.cdnaPosition = cdnaPosition;
	}

	public Integer getCodonChangeNumber()
	{
		return codonChangeNumber;
	}

	public void setCodonChangeNumber(Integer codonChangeNumber)
	{
		this.codonChangeNumber = codonChangeNumber;
	}

	public Integer getCodonNumber()
	{
		return codonNumber;
	}

	public void setCodonNumber(Integer codonNumber)
	{
		this.codonNumber = codonNumber;
	}

	public String getConsequence()
	{
		return consequence;
	}

	public void setConsequence(String consequence)
	{
		this.consequence = consequence;
	}

	public Integer getExonId()
	{
		return exonId;
	}

	public void setExonId(Integer exonId)
	{
		this.exonId = exonId;
	}

	public String getExonName()
	{
		return exonName;
	}

	public void setExonName(String exonName)
	{
		this.exonName = exonName;
	}

	public Integer getExonNumber()
	{
		return exonNumber;
	}

	public void setExonNumber(Integer exonNumber)
	{
		this.exonNumber = exonNumber;
	}

	public String getMid()
	{
		return mid;
	}

	public void setMid(String mid)
	{
		this.mid = mid;
	}

	public String getInheritance()
	{
		return inheritance;
	}

	public void setInheritance(String inheritance)
	{
		this.inheritance = inheritance;
	}

	public Integer getMutationId()
	{
		return mutationId;
	}

	public void setMutationId(Integer mutationId)
	{
		this.mutationId = mutationId;
	}

	public String getPid()
	{
		return pid;
	}

	public void setPid(String pid)
	{
		this.pid = pid;
	}

	public Integer getPhenotypeId()
	{
		return phenotypeId;
	}

	public void setPhenotypeId(Integer phenotypeId)
	{
		this.phenotypeId = phenotypeId;
	}

	public String getPhenotypeName()
	{
		return phenotypeName;
	}

	public void setPhenotypeName(String phenotypeName)
	{
		this.phenotypeName = phenotypeName;
	}

	public Integer getProteinDomainId()
	{
		return proteinDomainId;
	}

	public void setProteinDomainId(Integer proteinDomainId)
	{
		this.proteinDomainId = proteinDomainId;
	}

	public String getPublication()
	{
		return publication;
	}

	public void setPublication(String publication)
	{
		this.publication = publication;
	}

	public Boolean getReportedAsSNP()
	{
		return reportedAsSNP;
	}

	public void setReportedAsSNP(Boolean reportedAsSNP)
	{
		this.reportedAsSNP = reportedAsSNP;
	}

	public String getSearchTerm()
	{
		return searchTerm;
	}

	public void setSearchTerm(String searchTerm)
	{
		this.searchTerm = searchTerm;
	}

	public String getType()
	{
		return type;
	}

	public void setType(String type)
	{
		this.type = type;
	}

	public String getVariation()
	{
		return variation;
	}

	public void setVariation(String variation)
	{
		this.variation = variation;
	}

	public String toString()
	{
		List<String> result = new ArrayList<String>();

		if (this.cdnaPosition != null) result.add("nucleotide number = '" + this.cdnaPosition + "'");
		if (this.codonNumber != null) result.add("codon number = '" + this.codonNumber + "'");
		if (this.codonChangeNumber != null) result.add("codon change number = '" + this.codonChangeNumber + "'");
		if (this.consequence != null) result.add("consequence = '" + this.consequence + "'");
		if (this.exonId != null) result.add("exon/intron = '" + this.exonId + "'");
		if (this.exonName != null) result.add("exon/intron = '" + this.exonName + "'");
		if (this.exonNumber != null) result.add("exon/intron = '" + this.exonNumber + "'");
		if (this.phenotypeId != null) result.add("phenotype = '" + this.phenotypeId + "'");
		if (this.phenotypeName != null) result.add("phenotype = '" + this.phenotypeName + "'");
		if (this.searchTerm != null) result.add("search term = '" + this.searchTerm + "'");
		if (this.type != null) result.add("mutation type = '" + this.type + "'");
		if (this.variation != null) result.add("variation = '" + this.variation + "'");

		return StringUtils.join(result, " and ");
	}
}