ParamOptions.java

package org.molgenis.convertors.galaxy;

import java.util.ArrayList;
import java.util.List;

import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;

@XmlAccessorType(XmlAccessType.FIELD)
public class ParamOptions implements Input
{
	@XmlAttribute
	String from_file;

	@XmlAttribute
	String from_dataset;

	@XmlElement(name = "column")
	List<Column> columns = new ArrayList<Column>();

	@XmlElement(name = "filter")
	List<Filter> filters = new ArrayList<Filter>();

	@XmlElement
	Validator validator;

	@XmlAttribute
	String startswith; // seems to mark position in file to start reading in
						// combination with from_file

	public String toString()
	{
		String columns_string = "";
		for (Column c : columns)
			columns_string += "\n\t" + c.toString();
		String filters_string = "";
		for (Filter f : filters)
			filters_string += "\n\t" + f.toString();
		String validators_string = "";
		if (validator != null) validators_string += "\n\t" + validator.toString();
		return String.format("Options(from_file='%s' from_dataset='%s' startswith='%s'%s%s%s", from_file, from_dataset,
				startswith, columns_string, filters_string, validators_string);
	}

}