TableField.java

package plugins.predictionModel;

import java.util.HashMap;

import org.molgenis.organization.InvestigationElement;
import org.molgenis.pheno.Category;
import org.molgenis.pheno.Measurement;
import org.molgenis.pheno.ObservedValue;
import org.molgenis.pheno.Panel;
import org.molgenis.protocol.Protocol;
import org.molgenis.protocol.ProtocolApplication;
import org.molgenis.util.SimpleTuple;
import org.molgenis.util.Tuple;

public class TableField
{

	// Prediction prediction = null;

	public static boolean COLVALUE = true;

	public static boolean COLHEADER = false;

	// e.g. 'Protocol'
	String classType = "";

	// e.g. 'name'
	String fieldName = "";

	int columnIndex;

	int[] dependentColumnIndex;

	Boolean vertical;

	// TableField Object = null;

	private String Relation = "";

	private HashMap<String, Object> nameToClass;

	Protocol protocol = null;

	ObservedValue observedValue = null;

	Measurement measurement = null;

	Panel panel = null;

	Category category = null;

	private TableField Target = null;

	private TableField Feature = null;

	private Tuple defaults = new SimpleTuple();

	private ProtocolApplication protocolApplication = null;

	private int observationTarget = -1;

	private InvestigationElement entity = null;

	private String relationString = null;

	public InvestigationElement getEntity()
	{
		return entity;
	}

	public void setEntity(InvestigationElement entity)
	{
		this.entity = entity;
	}

	public TableField(String ClassType, String fieldName, int columnIndex, Boolean Vertical, Tuple defaults,
			int... dependentColumnIndex)
	{
		this.fieldName = fieldName;
		this.classType = ClassType;
		this.columnIndex = columnIndex;
		this.vertical = Vertical;
		this.defaults = defaults;
		this.dependentColumnIndex = dependentColumnIndex;
	}

	// public TableField(String ClassType,int columnIndex, Boolean Vertical) {
	// this.classType = ClassType;
	// this.columnIndex = columnIndex;
	// this.vertical = Vertical;
	// }

	// public TableField(Panel panel, String ClassType,int columnIndex, Boolean
	// Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.panel = panel;
	// // this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	//
	// }
	//
	// public TableField(Measurement measurement, String ClassType,int
	// columnIndex, Boolean Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.measurement = measurement;
	// this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	// }
	// public TableField(ObservedValue observedValue, String ClassType,int
	// columnIndex, Boolean Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.observedValue = observedValue;
	// this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	// }
	//
	// public TableField(Protocol protocol, String ClassType,int columnIndex,
	// Boolean Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.protocol = protocol;
	// this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	// }
	//
	// public TableField(ProtocolApplication protocolApplication, String
	// ClassType,int columnIndex, Boolean Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.protocolApplication = protocolApplication;
	// this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	// }
	//
	// public TableField(Category category, String ClassType, int columnIndex,
	// Boolean Vertical) {
	// this(ClassType, columnIndex, Vertical);
	// this.category = category;
	// this.ClassType = ClassType;
	// this.columnIndex = columnIndex;
	// this.Vertical = Vertical;
	// }

	public Tuple getDefaults()
	{
		return defaults;
	}

	public void setDefaults(Tuple defaults)
	{
		this.defaults = defaults;
	}

	public int[] getDependentColumnIndex()
	{
		return dependentColumnIndex;
	}

	public void setDependentColumnIndex(int... dependentColumnIndex)
	{
		this.dependentColumnIndex = dependentColumnIndex;
	}

	public void initializeHashMap(String ClassType)
	{
	}

	public String getClassType()
	{
		return classType;
	}

	public Boolean getVertical()
	{
		return vertical;
	}

	public int getColumnIndex()
	{
		return columnIndex;
	}

	// public Prediction getPrediction(){
	// return prediction;
	// }

	public void setRelation(TableField Target, TableField Feature)
	{

		this.Target = Target;
		this.Feature = Feature;
	}

	public TableField getTarget()
	{
		return Target;
	}

	public TableField getFeature()
	{
		return Feature;
	}

	public String getFieldName()
	{
		return fieldName;
	}

	public void setFieldName(String fieldName)
	{
		this.fieldName = fieldName;
	}

	public String getValueSplitter()
	{
		return "\\|";
	}

	public void setObservationTarget(int observationTarget)
	{
		this.observationTarget = observationTarget;
	}

	public int getObservationTarget()
	{
		return observationTarget;
	}

	public void setRelation(String fieldName)
	{

		this.relationString = fieldName;

	}

	public String getRelationString()
	{
		return relationString;
	}

	public void setRelationString(String relationString)
	{
		this.relationString = relationString;
	}
}