IndividualMatrixModel.java

/* Date:        October 21, 2011
 * Template:	EasyPluginModelGen.java.ftl
 * generator:   org.molgenis.generators.ui.EasyPluginModelGen 4.0.0-testing
 * 
 * THIS FILE IS A TEMPLATE. PLEASE EDIT :-)
 */

package plugins.matrix;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.Date;
import java.util.List;

import org.molgenis.framework.db.Database;
import org.molgenis.framework.ui.EasyPluginModel;
import org.molgenis.matrix.component.MatrixViewer;

/**
 * GidsMatrixModel takes care of all state and it can have helper methods to
 * query the database. It should not contain layout or application logic which
 * are solved in View and Controller.
 * 
 * @See org.molgenis.framework.ui.ScreenController for available services.
 */
public class IndividualMatrixModel extends EasyPluginModel
{
	// a system variable that is needed by tomcat
	private static final long serialVersionUID = 1L;

	MatrixViewer matrixViewerIndv = null;
	MatrixViewer matrixViewerSample = null;
	static String INDVMATRIX = "indvmatrix";
	static String SAMPLEMATRIX = "samplematrix";
	String action = "Individual_info";
	boolean error = false;
	String selection = null;
	String chosenProtocolNameI = "Individual_info";
	String chosenProtocolNameS = "Sample_info";
	List<Integer> listIndividuals = null;
	String individualNavClass;
	String personalNavClass;
	String medicalNavClass;
	String projectSpecificNavClass;
	String sampleNavClass;
	String dnaNavClass;
	String rnaNavClass;
	String biopsiesNavClass;
	String serumNavClass;
	String plasmaNavClass;
	String hlaNavClass;
	int selectedScreenI = 1;
	int selectedScreenS = 1;
	private Boolean checkIfInvestchanges = false;
	private Boolean checkForPaging = false;
	private String lastInvest = "";
	boolean isProjectShared;
	String investigation;
	private List<String> measExport;

	// hack to pass database to toHtml() via toHtml(db)
	// Database toHtmlDb;
	// public void setToHtmlDb(Database toHtmlDb)
	// {
	// this.toHtmlDb = toHtmlDb;
	// }

	// another example, you can also use getInvestigations() and
	// setInvestigations(...)
	// public List<Investigation> investigations = new
	// ArrayList<Investigation>();

	public List<String> getMeasExport()
	{
		return measExport;
	}

	public void setMeasExport(List<String> measExport)
	{
		this.measExport = measExport;
	}

	public IndividualMatrixModel(IndividualMatrix controller)
	{
		// each Model can access the controller to notify it when needed.
		super(controller);
	}

	public String getAction()
	{
		return action;
	}

	public void setAction(String action)
	{
		this.action = action;
	}

	public String getSelection()
	{
		return selection;
	}

	public void setSelection(String selection)
	{
		this.selection = selection;
	}

	public String getChosenProtocolNameI()
	{
		return chosenProtocolNameI;
	}

	public void setChosenProtocolNameI(String chosenProtocolName)
	{
		this.chosenProtocolNameI = chosenProtocolName;
	}

	public String getChosenProtocolNameS()
	{
		return chosenProtocolNameS;
	}

	public void setChosenProtocolNameS(String chosenProtocolNameS)
	{
		this.chosenProtocolNameS = chosenProtocolNameS;
	}

	public List<Integer> getListIndividuals()
	{
		return listIndividuals;
	}

	public void setListIndividuals(List<Integer> listIndividuals)
	{
		this.listIndividuals = listIndividuals;
	}

	/**
	 * Render the matrix viewer as html.
	 * 
	 * @return
	 */
	public String getMatrixViewerIndv()
	{
		if (matrixViewerIndv != null)
		{
			// matrixViewerIndv.setToHtmlDb(toHtmlDb);
			return matrixViewerIndv.render();
		}
		else
		{
			return "No viewer available, matrix cannot be rendered.";
		}
	}

	public String getMatrixViewerSample()
	{
		if (matrixViewerSample != null)
		{
			return matrixViewerSample.render();
		}
		else
		{
			return "No viewer available, matrix cannot be rendered.";
		}
	}

	public boolean isError()
	{
		return error;
	}

	public void setError(boolean error)
	{
		this.error = error;
	}

	public String getIndividualNavClass()
	{
		return individualNavClass;
	}

	public void setIndividualNavClass(String individualNavClass)
	{
		this.individualNavClass = individualNavClass;
	}

	public String getPersonalNavClass()
	{
		return personalNavClass;
	}

	public void setPersonalNavClass(String personalNavClass)
	{
		this.personalNavClass = personalNavClass;
	}

	public String getMedicalNavClass()
	{
		return medicalNavClass;
	}

	public void setMedicalNavClass(String medicalNavClass)
	{
		this.medicalNavClass = medicalNavClass;
	}

	public String getSampleNavClass()
	{
		return sampleNavClass;
	}

	public void setSampleNavClass(String sampleNavClass)
	{
		this.sampleNavClass = sampleNavClass;
	}

	public String getDnaNavClass()
	{
		return dnaNavClass;
	}

	public void setDnaNavClass(String dnaNavClass)
	{
		this.dnaNavClass = dnaNavClass;
	}

	public String getRnaNavClass()
	{
		return rnaNavClass;
	}

	public void setRnaNavClass(String rnaNavClass)
	{
		this.rnaNavClass = rnaNavClass;
	}

	public String getBiopsiesNavClass()
	{
		return biopsiesNavClass;
	}

	public void setBiopsiesNavClass(String biopsiesNavClass)
	{
		this.biopsiesNavClass = biopsiesNavClass;
	}

	public String getSerumNavClass()
	{
		return serumNavClass;
	}

	public void setSerumNavClass(String serumNavClass)
	{
		this.serumNavClass = serumNavClass;
	}

	public String getPlasmaNavClass()
	{
		return plasmaNavClass;
	}

	public void setPlasmaNavClass(String plasmaNavClass)
	{
		this.plasmaNavClass = plasmaNavClass;
	}

	public String getHlaNavClass()
	{
		return hlaNavClass;
	}

	public void setHlaNavClass(String hlaNavClass)
	{
		this.hlaNavClass = hlaNavClass;
	}

	public int getSelectedScreenI()
	{
		return selectedScreenI;
	}

	public void setSelectedScreenI(int selectedScreenI)
	{
		this.selectedScreenI = selectedScreenI;
	}

	public int getSelectedScreenS()
	{
		return selectedScreenS;
	}

	public void setSelectedScreenS(int selectedScreenS)
	{
		this.selectedScreenS = selectedScreenS;
	}

	public Boolean getCheckIfInvestchanges()
	{
		return checkIfInvestchanges;
	}

	public void setCheckIfInvestchanges(Boolean checkIfInvestchanges)
	{
		this.checkIfInvestchanges = checkIfInvestchanges;
	}

	public Boolean getCheckForPaging()
	{
		return checkForPaging;
	}

	public void setCheckForPaging(Boolean checkForPaging)
	{
		this.checkForPaging = checkForPaging;
	}

	public String getLastInvest()
	{
		return lastInvest;
	}

	public void setLastInvest(String lastInvest)
	{
		this.lastInvest = lastInvest;
	}

	public boolean isProjectShared()
	{
		return isProjectShared;
	}

	public void setProjectShared(boolean isProjectShared)
	{
		this.isProjectShared = isProjectShared;
	}

	public String getInvestigation()
	{
		return investigation;
	}

	public void setInvestigation(String investigation)
	{
		this.investigation = investigation;
	}

	public String getProjectSpecificNavClass()
	{
		return projectSpecificNavClass;
	}

	public void setProjectSpecificNavClass(String projectSpecificNavClass)
	{
		this.projectSpecificNavClass = projectSpecificNavClass;
	}

}