/* * Copyright (C) 2011 SeqWare * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. */ package net.sourceforge.seqware.webservice.resources.tables; import java.io.IOException; import java.util.ArrayList; import java.util.List; import net.sf.beanlib.hibernate3.Hibernate3DtoCopier; import net.sourceforge.seqware.common.business.WorkflowService; import net.sourceforge.seqware.common.factory.BeanFactory; import net.sourceforge.seqware.common.model.Registration; import net.sourceforge.seqware.common.model.Workflow; import net.sourceforge.seqware.common.model.lists.WorkflowList; import net.sourceforge.seqware.common.util.Log; import net.sourceforge.seqware.common.util.xmltools.JaxbObject; import net.sourceforge.seqware.common.util.xmltools.XmlTools; import org.restlet.data.Status; import org.restlet.representation.Representation; import org.restlet.resource.Get; import org.restlet.resource.Post; import org.restlet.resource.ResourceException; import org.w3c.dom.Document; import org.xml.sax.SAXException; /** * <p> * WorkflowResource class. * </p> * * @author mtaschuk * @version $Id: $Id */ public class WorkflowResource extends DatabaseResource { /** * <p> * Constructor for WorkflowResource. * </p> */ public WorkflowResource() { super("Workflows"); } /** * <p> * getXml. * </p> */ @Get public void getXml() { authenticate(); WorkflowService ss = BeanFactory.getWorkflowServiceBean(); Document line = null; if (queryValues.get("id") != null) { Workflow p = (Workflow) testIfNull(ss.findByID(parseClientInt(queryValues.get("id")))); line = detachWorkflow(p); } else if (queryValues.get("name") != null) { List<Workflow> workflows = (List<Workflow>) testIfNull(ss.findByName(queryValues.get("name"))); if (queryValues.get("version") != null) { String version = queryValues.get("version").trim(); for (Workflow workflow : workflows) { if (version.equals(workflow.getVersion())) { line = detachWorkflow(workflow); } } } else { line = detachWorkflowList(workflows); } } else { List<Workflow> workflows = ss.list(); line = detachWorkflowList(workflows); } getResponse().setEntity(XmlTools.getRepresentation(line)); } private Document detachWorkflow(Workflow workflow) { Hibernate3DtoCopier copier = new Hibernate3DtoCopier(); JaxbObject<Workflow> jaxbTool = new JaxbObject<>(); Workflow dto = copier.hibernate2dto(Workflow.class, workflow); Document line = XmlTools.marshalToDocument(jaxbTool, dto); return line; } private Document detachWorkflowList(List<Workflow> workflows) { Hibernate3DtoCopier copier = new Hibernate3DtoCopier(); JaxbObject<WorkflowList> jaxbTool = new JaxbObject<>(); WorkflowList eList = new WorkflowList(); eList.setList(new ArrayList()); for (Workflow workflow : workflows) { Workflow dto = copier.hibernate2dto(Workflow.class, workflow); eList.add(dto); } Document line = XmlTools.marshalToDocument(jaxbTool, eList); return line; } /** * <p> * postJaxb. * </p> * * @param entity * a {@link org.restlet.representation.Representation} object. */ @Post("xml") public void postJaxb(Representation entity) { authenticate(); try { JaxbObject<Workflow> jo = new JaxbObject<>(); String text = entity.getText(); Workflow p; try { p = (Workflow) XmlTools.unMarshal(jo, new Workflow(), text); } catch (SAXException ex) { throw new ResourceException(Status.CLIENT_ERROR_UNPROCESSABLE_ENTITY, ex); } if (p.getOwner() != null) { Registration r = BeanFactory.getRegistrationServiceBean().findByEmailAddress(p.getOwner().getEmailAddress()); if (r != null) { p.setOwner(r); } else { Log.info("Could not be found: owner" + p.getOwner()); } } else { p.setOwner(registration); } // persist p WorkflowService ws = BeanFactory.getWorkflowServiceBean(); Integer id = ws.insert(registration, p); Workflow w = (Workflow) testIfNull(ws.findBySWAccession(id)); Hibernate3DtoCopier copier = new Hibernate3DtoCopier(); Workflow detachedW = copier.hibernate2dto(Workflow.class, w); Document line = XmlTools.marshalToDocument(jo, detachedW); getResponse().setEntity(XmlTools.getRepresentation(line)); getResponse().setLocationRef(getRequest().getRootRef() + "/workflows/" + detachedW.getSwAccession()); getResponse().setStatus(Status.SUCCESS_CREATED); } catch (SecurityException e) { getResponse().setStatus(Status.CLIENT_ERROR_FORBIDDEN, e); } catch (IOException e) { e.printStackTrace(); getResponse().setStatus(Status.CLIENT_ERROR_BAD_REQUEST, e); } catch (Exception e) { e.printStackTrace(); getResponse().setStatus(Status.SERVER_ERROR_INTERNAL, e); } } }